View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_high_47 (Length: 252)
Name: NF3906_high_47
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_high_47 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 42076871 - 42076619
Alignment:
| Q |
11 |
agcaaaggtaaaggtagctgtggaattttatgtattaaaccaacatacggcagcaacagagttctattctatacaacaaaggtctcattcaggttcatcg |
110 |
Q |
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| T |
42076871 |
agcaaaggtaaaggtagctgtggaattttatgtattaaaccaacatacggcagcaacagagttctattctatccaacaaaggtctcattcaggttcatcg |
42076772 |
T |
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| Q |
111 |
aatattttccaattaag--agaaaagaagaaactagaaacaaaacacc---ataataataagaagcaaagaaaacttgtactaaacgacatcaaccataa |
205 |
Q |
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| T |
42076771 |
aatattttccaattaagaaagaaaagaagaaactagaaacaaaacaccataataataataagaagcaaagaaaacttgtactaaacgacatcaaccataa |
42076672 |
T |
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| Q |
206 |
aa------taaaatatcatacaaaagattactaggtaggttcacagtatcaat |
252 |
Q |
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| T |
42076671 |
aataaaattaaaatatcatacaaaagattactaggtaggttcacagtatcaat |
42076619 |
T |
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