View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_high_53 (Length: 246)
Name: NF3906_high_53
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_high_53 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 3246168 - 3246391
Alignment:
| Q |
2 |
tcccttgcttccactgcttttgcaactaattttgtccaagacaacgctggtttgtactttgctttttctaacattaaaattgttggttgatataagatat |
101 |
Q |
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| T |
3246168 |
tcccttgcttccactgcttttgcaactaattttgtccaagacaacgctggtttgtactttgctttttctaacattaaaattgttggttgatataggatat |
3246267 |
T |
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| Q |
102 |
attaaaattttgagtttattatgctaatttaacaacaccaaagaaggtaatttatgggtgaggatcaatgtaataccgacacttttgatcaaaatatcca |
201 |
Q |
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| T |
3246268 |
attaaaattttgagtttattatgctaatttaacaacaccgaagaaggtaatttatgggtgaggatcaatgtaatactgacacttttgatcaaaagatgca |
3246367 |
T |
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| Q |
202 |
tggtggccaacacgcgtggcactg |
225 |
Q |
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|||||||||| ||||||| ||||| |
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| T |
3246368 |
tggtggccaatacgcgtgacactg |
3246391 |
T |
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