View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3906_high_6 (Length: 641)

Name: NF3906_high_6
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3906_high_6
NF3906_high_6
[»] chr1 (4 HSPs)
chr1 (336-622)||(8631769-8632055)
chr1 (217-298)||(17743699-17743780)
chr1 (215-298)||(5716254-5716337)
chr1 (397-470)||(37108463-37108536)
[»] chr5 (3 HSPs)
chr5 (398-628)||(37609057-37609285)
chr5 (392-482)||(22861313-22861403)
chr5 (301-348)||(37609284-37609331)
[»] chr8 (1 HSPs)
chr8 (140-301)||(31007631-31007792)
[»] scaffold0047 (1 HSPs)
scaffold0047 (301-494)||(72685-72877)
[»] chr3 (1 HSPs)
chr3 (338-411)||(46673457-46673531)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 336 - 622
Target Start/End: Original strand, 8631769 - 8632055
Alignment:
Q  336 atatagatgaagattatttt-gaacaaattatttttaaattgttagttgcaactaacatgtatgacatttatattatatttgcaataagacaatcgaata 434  Q
    ||||||||||||| | |||| ||||||||||||||||||||| ||||| | |||||||||||||| |||||||||||||| |||||||||||||| ||||    
T  8631769 atatagatgaagactgtttttgaacaaattatttttaaattgctagttacgactaacatgtatgatatttatattatattcgcaataagacaatcaaata 8631868  T
Q  435 taatggcatgaaacaaaataaatttatcacaacttttcactgatataagattttatcttacaaaagtagtttaagttataagtttttgcttgatggggta 534  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  8631869 taatggaatgaaacaaaataaatttatcacaacttttcactaatataagattttatcttacaaaagtagtctaagttataagtttttgctggatggggta 8631968  T
Q  535 ataggaacttgatcactacttgatattttttagacaacttgatcacaacttaatcatattattgtcctccacatgtttgattgtttcc 622  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8631969 ataggaacttgatc-ctacttgatattttttagacaacttgatcacaacttaatcatattattgtcctccacatgtttgattgtttcc 8632055  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 217 - 298
Target Start/End: Original strand, 17743699 - 17743780
Alignment:
Q  217 accacatatggcgtatctctggcccaagattattataccggtccacgacctaataataatttatttaaaaattctttcaaaa 298  Q
    |||||||||| |||| ||||||||||| ||||||||||||||||||||| ||||| ||  ||||||||||||||||||||||    
T  17743699 accacatatgacgtacctctggcccaatattattataccggtccacgacgtaatagtagattatttaaaaattctttcaaaa 17743780  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 215 - 298
Target Start/End: Complemental strand, 5716337 - 5716254
Alignment:
Q  215 ggaccacatatggcgtatctctggcccaagattattataccggtccacgacctaataataatttatttaaaaattctttcaaaa 298  Q
    ||||||||||||  ||| ||||| ||||| |||||||||||||||||| || ||||| ||| ||||||||||||||||| ||||    
T  5716337 ggaccacatatgatgtacctctgacccaatattattataccggtccacaacgtaatagtaaattatttaaaaattcttttaaaa 5716254  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 470
Target Start/End: Complemental strand, 37108536 - 37108463
Alignment:
Q  397 tgacatttatattatatttgcaataagacaatcgaatataatggcatgaaacaaaataaatttatcacaacttt 470  Q
    ||||||||| ||| |||||| |||||  ||||| |||||||||  |||  ||| ||||||||||||||||||||    
T  37108536 tgacatttaaattttatttgtaataacgcaatcaaatataatgatatgggacacaataaatttatcacaacttt 37108463  T

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Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 398 - 628
Target Start/End: Complemental strand, 37609285 - 37609057
Alignment:
Q  398 gacatttatattatatttgcaataagacaatcgaatataatggcatgaaacaaaataaatttatcacaacttttcactgatataagattttatcttacaa 497  Q
    ||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37609285 gacatttatattatattcgcaataagacaatcaaatataatggaatgaaacaaaataaatttatcacaacttttcactaatataagattttatcttacaa 37609186  T
Q  498 aagtagtttaagttataagtttttgcttgatggggtaataggaacttgatcactacttgatattttttagacaacttgatcacaacttaatcatattatt 597  Q
    || |||| ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37609185 aa-tagtctaagttaaaagtttttgctggatggggtaataggaacttgatc-ctacttgatattttttagacaacttgatcacaacttaatcatattatt 37609088  T
Q  598 gtcctccacatgtttgattgtttcctctgtg 628  Q
    |||||||||||||||||||||||||||||||    
T  37609087 gtcctccacatgtttgattgtttcctctgtg 37609057  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 392 - 482
Target Start/End: Complemental strand, 22861403 - 22861313
Alignment:
Q  392 atgtatgacatttatattatatttgcaataagacaatcgaatataatggcatgaaacaaaataaatttatcacaacttttcactgatataa 482  Q
    |||||||  |||||||||| |||||||||||||||||| |||||||||   ||||| ||||||||||| ||||||  |||||||| |||||    
T  22861403 atgtatgctatttatattacatttgcaataagacaatcaaatataatgctttgaaataaaataaatttctcacaaactttcactggtataa 22861313  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 37609331 - 37609284
Alignment:
Q  301 actagacttttcacctgtactatcgcacgggtctgatatagatgaaga 348  Q
    ||||||||||||||| || ||||||||||||| ||||||||| |||||    
T  37609331 actagacttttcacccgtgctatcgcacgggtgtgatatagaagaaga 37609284  T

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Target: chr8 (Bit Score: 130; Significance: 5e-67; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 140 - 301
Target Start/End: Complemental strand, 31007792 - 31007631
Alignment:
Q  140 tttggcaagtcagagcataacagacaagttggaacgtaaatgtggcccaagttaaattagttaccgggtcaatctggaccacatatggcgtatctctggc 239  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||| |||||||||| ||||| ||||    
T  31007792 tttggcaagtcagagcataacagacaagttggaacgtaaaggtggcccaagttaaattagttaccgagtcaatttggatcacatatggcatatctttggc 31007693  T
Q  240 ccaagattattataccggtccacgacctaataataatttatttaaaaattctttcaaaagaa 301  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  31007692 ccaagattattataccggtccacgacctaataataatttatataaaaattccttcaaaagaa 31007631  T

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Target: scaffold0047 (Bit Score: 111; Significance: 1e-55; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 301 - 494
Target Start/End: Complemental strand, 72877 - 72685
Alignment:
Q  301 actagacttttcacctgtactatcgcacgggtctgatatagatgaagatta-ttttgaacaaattatttttaaattgttagttgcaactaacatgtatga 399  Q
    ||||||||||||||| || ||||||||||| | |||||||||||||||||| |||| ||||||| || ||||||||||||||||| ||||||||||||||    
T  72877 actagacttttcacccgtgctatcgcacggatatgatatagatgaagattagttttaaacaaatgatctttaaattgttagttgctactaacatgtatga 72778  T
Q  400 catttatattatatttgcaataagacaatcgaatataatggcatgaaacaaaataaatttatcacaacttttcactgatataagattttatctta 494  Q
    ||||||  |||||||  |||||||| |||||||||||||| |||||||||||||||||||||  |||| ||||||||||||||||||||||||||    
T  72777 catttaccttatattcacaataaga-aatcgaatataatgacatgaaacaaaataaatttatttcaac-tttcactgatataagattttatctta 72685  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 338 - 411
Target Start/End: Original strand, 46673457 - 46673531
Alignment:
Q  338 atagatgaagattatttt-gaacaaattatttttaaattgttagttgcaactaacatgtatgacatttatattat 411  Q
    ||||||||||||| |||| | ||||||||||||||||||| ||||||  ||||||||||| ||||||||||||||    
T  46673457 atagatgaagattgtttttggacaaattatttttaaattgctagttgtgactaacatgtaagacatttatattat 46673531  T

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