View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3906_high_64 (Length: 214)
Name: NF3906_high_64
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_high_64 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 5178341 - 5178139
Alignment:
| Q |
1 |
tttgtgttttctcctcatgcacaatgattcttcagtttatctaggtaagatttccaaatgttaagaatgtgtttcttttccttatgatgatagaaaaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5178341 |
tttgtgttttctcctcatgcacaatgattcttcagtttatctaggtaagatttccaaatgttaagaatgtgtttcttttccttatgatgatagaaaaaga |
5178242 |
T |
|
| Q |
101 |
ggaacatttatgtgtataagtaactccaagaattttattgtaggtggttatgatatagaagaaaaagctgcaagagcttatgatatggctgcactcaagt |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5178241 |
ggaacatttatgtgtataagtaagtccaagaattttattgtaggtggttatgatatagaagaaaaagctgcaagagcttatgatatggctgcactcaagt |
5178142 |
T |
|
| Q |
201 |
att |
203 |
Q |
| |
|
||| |
|
|
| T |
5178141 |
att |
5178139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 40190009 - 40190071
Alignment:
| Q |
141 |
taggtggttatgatatagaagaaaaagctgcaagagcttatgatatggctgcactcaagtatt |
203 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||| || ||||||||||||| |
|
|
| T |
40190009 |
taggtggttatgatatggaagaaaaagctgctagagcttatgatcaagcagcactcaagtatt |
40190071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 4846707 - 4846646
Alignment:
| Q |
142 |
aggtggttatgatatagaagaaaaagctgcaagagcttatgatatggctgcactcaagtatt |
203 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||| | ||||| ||||| |||| |
|
|
| T |
4846707 |
aggtggttatgatatggaagagaaagctgcaagagcttatgatcttgctgctctcaaatatt |
4846646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 47753423 - 47753465
Alignment:
| Q |
142 |
aggtggttatgatatagaagaaaaagctgcaagagcttatgat |
184 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
47753423 |
aggtggttatgatatggaagagaaagctgcaagagcttatgat |
47753465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University