View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3906_low_1 (Length: 875)

Name: NF3906_low_1
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3906_low_1
NF3906_low_1
[»] chr1 (11 HSPs)
chr1 (61-571)||(52508164-52508665)
chr1 (571-854)||(52499221-52499502)
chr1 (506-594)||(32591328-32591416)
chr1 (506-581)||(777288-777363)
chr1 (549-604)||(13281207-13281262)
chr1 (512-603)||(27579556-27579647)
chr1 (532-604)||(17504360-17504432)
chr1 (506-574)||(43879866-43879934)
chr1 (552-610)||(43416076-43416134)
chr1 (506-610)||(48420319-48420424)
chr1 (552-643)||(45752616-45752707)
[»] chr5 (8 HSPs)
chr5 (61-571)||(24622200-24622703)
chr5 (571-854)||(24631250-24631531)
chr5 (326-497)||(31063723-31063893)
chr5 (318-496)||(17203841-17204014)
chr5 (506-580)||(30841251-30841324)
chr5 (522-643)||(38098973-38099094)
chr5 (506-640)||(35583339-35583473)
chr5 (558-603)||(25536460-25536505)
[»] chr2 (11 HSPs)
chr2 (275-474)||(10924083-10924282)
chr2 (317-494)||(26602050-26602227)
chr2 (299-474)||(26885774-26885940)
chr2 (337-495)||(28313488-28313645)
chr2 (506-610)||(31555644-31555746)
chr2 (166-250)||(10923963-10924047)
chr2 (552-627)||(21566032-21566107)
chr2 (550-610)||(42444399-42444459)
chr2 (326-473)||(26262592-26262739)
chr2 (533-579)||(17640942-17640988)
chr2 (562-640)||(37867430-37867508)
[»] chr3 (7 HSPs)
chr3 (299-495)||(35309884-35310081)
chr3 (326-497)||(11519005-11519175)
chr3 (552-629)||(23267828-23267905)
chr3 (532-610)||(13475539-13475616)
chr3 (552-610)||(19468231-19468289)
chr3 (558-610)||(14770960-14771012)
chr3 (552-604)||(49758590-49758642)
[»] chr7 (8 HSPs)
chr7 (506-640)||(22701595-22701728)
chr7 (506-581)||(48103055-48103130)
chr7 (314-466)||(10348626-10348778)
chr7 (506-603)||(1460418-1460516)
chr7 (325-495)||(13588750-13588919)
chr7 (552-610)||(36251528-36251586)
chr7 (558-643)||(39786331-39786416)
chr7 (552-610)||(17038330-17038388)
[»] chr8 (12 HSPs)
chr8 (506-610)||(9788559-9788663)
chr8 (506-610)||(9187392-9187495)
chr8 (543-610)||(11941425-11941493)
chr8 (506-602)||(24411960-24412056)
chr8 (552-627)||(11929810-11929885)
chr8 (552-603)||(42862472-42862523)
chr8 (552-610)||(41666910-41666968)
chr8 (325-392)||(2078832-2078899)
chr8 (335-413)||(9174037-9174114)
chr8 (552-610)||(15044473-15044531)
chr8 (506-574)||(32345264-32345333)
chr8 (506-574)||(32361872-32361941)
[»] scaffold1017 (1 HSPs)
scaffold1017 (506-643)||(2379-2517)
[»] chr6 (8 HSPs)
chr6 (552-643)||(23124223-23124314)
chr6 (506-610)||(4965679-4965783)
chr6 (543-627)||(30254506-30254590)
chr6 (552-610)||(13240894-13240952)
chr6 (558-604)||(30591105-30591151)
chr6 (552-602)||(31994350-31994400)
chr6 (558-627)||(3834073-3834142)
chr6 (552-628)||(31204248-31204325)
[»] chr4 (8 HSPs)
chr4 (523-610)||(19545417-19545504)
chr4 (506-610)||(4609202-4609306)
chr4 (552-643)||(26510422-26510513)
chr4 (537-608)||(54983096-54983167)
chr4 (558-643)||(53451037-53451122)
chr4 (558-629)||(34409964-34410035)
chr4 (558-610)||(47044470-47044522)
chr4 (506-610)||(24637741-24637846)
[»] scaffold0013 (1 HSPs)
scaffold0013 (514-643)||(101305-101434)
[»] scaffold0128 (1 HSPs)
scaffold0128 (552-610)||(43308-43366)
[»] scaffold0154 (1 HSPs)
scaffold0154 (552-610)||(32809-32867)


Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 61 - 571
Target Start/End: Complemental strand, 52508665 - 52508164
Alignment:
Q  61 aaattatcctctatttggattttagaatccgaactagtttaggattctaaaattccgaaacgagtccaaaacttgatggcaaccatctctgatttccatc 160  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||    
T  52508665 aaattatcctcaatttggattttagaatccaaactagtttaggattctaaaaatccgaaacgagtccaaaacttgatggcaaccatctttgattttcatc 52508566  T
Q  161 atttaacaagagtatggtgaaatcatgtacgaaatgtataatccggattttatttacgtgtttcagattgtatattccaaaatatcaactnnnnnnnnnn 260  Q
    |||||||| ||||||||||||| ||||| ||  |||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||              
T  52508565 atttaacaggagtatggtgaaaccatgtccgggatgtgtaatccgaattttatttacgtgtttcagattgtatatttcaaaatatcaacttaaaaaaaaa 52508466  T
Q  261 -cggcaaacttataaattgtataatctgaaacacttaactatataaggttcatccataacctaggagaagttcatcacctttatcacctaacactcccta 359  Q
     ||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||           ||||||||||||||||||||| |||||||||    
T  52508465 acggcaaacttatagattgtataatctaaaacgcttaactatataaggttcatccata-----------gttcatcacctttatcacctaccactcccta 52508377  T
Q  360 cacctctaaaaacatacaattttgagcgaaaacctgaattggagtagtaatctgatcaccaagggtcttttaaaacatcattttcgtatgaatgcacatg 459  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  52508376 cacctctaaaaacatacaattttgagcgaaaacatgagttggagtagtaatctggtcaccaaggggcttttaaaacatcattttcgtatgaatgcacatg 52508277  T
Q  460 taatgtttatataaattcaccctcattcgatttctaggcgatcttatttttcaaatgataaag-aaaaaataggacatatacaatttgttaaattttaat 558  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| |||||||||||| ||||||||||||  |    
T  52508276 taatgtttatataaattcaccctcattcgatttctaggcgctcttatttttcaaatgataaggaaaaaaattggacatatacaacttgttaaattttgtt 52508177  T
Q  559 ttaatatttgaat 571  Q
    |||||||||||||    
T  52508176 ttaatatttgaat 52508164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 571 - 854
Target Start/End: Complemental strand, 52499502 - 52499221
Alignment:
Q  571 tttactcttattcagttgttatatgtgatatttgcattgagaatgaagagtaattttggtaggagaaaaagtcggttcaatgacacgtggcaaacaagaa 670  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52499502 tttactcttatttagttgttatatgtgatatttgcattgagaatgaagagtaattttggtaggagaaaaagtcggttcaatgacacgtggcaaacaagaa 52499403  T
Q  671 ttaaacggttgacattgaaaaataactctttattactgttcctcttcttctcaaccatactatccacactcttcttctcctctcacgtttccttaactca 770  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  52499402 ttaaacggttgacattgaaaaataactctttactactgttcctcttcttctcaaccatactatc--cactcttcttctcctctcacgtttccttaactca 52499305  T
Q  771 ccatcttgtttccatcgaacttcctcacagccgccggaaaggcccatcgctccgccgcgaattgctgccgatgtaacctgttct 854  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  52499304 ccatcttgtttccatcgaacttcctcacagccgccggaaaggcccatcgctccgccgcggattgctgccgatgtaacctgttct 52499221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 506 - 594
Target Start/End: Original strand, 32591328 - 32591416
Alignment:
Q  506 tttttcaaatgataaagaaaaaataggacatatacaatttgttaaattttaatttaatatttgaatttactcttattcagttgttatat 594  Q
    ||||| |||||||||||||||||| | ||||||| ||||| ||| |||||  ||||||||||||||||||| ||||  | |||||||||    
T  32591328 ttttttaaatgataaagaaaaaatcgaacatataaaatttattacattttgttttaatatttgaatttacttttatctatttgttatat 32591416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 506 - 581
Target Start/End: Original strand, 777288 - 777363
Alignment:
Q  506 tttttcaaatgataaagaaaaaataggacatatacaatttgttaaattttaatttaatatttgaatttactcttat 581  Q
    ||||| |||||||||||||||||| ||| ||||| | ||||||| |||||  ||||||||||||||||||| ||||    
T  777288 ttttttaaatgataaagaaaaaatcggatatatatagtttgttacattttgttttaatatttgaatttacttttat 777363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 549 - 604
Target Start/End: Original strand, 13281207 - 13281262
Alignment:
Q  549 aaattttaatttaatatttgaatttactcttattcagttgttatatgtgatatttg 604  Q
    |||||||| ||||||||||||||||||||||||| | ||||||||| |||||||||    
T  13281207 aaattttattttaatatttgaatttactcttatttatttgttatatatgatatttg 13281262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 512 - 603
Target Start/End: Original strand, 27579556 - 27579647
Alignment:
Q  512 aaatgataaagaaaaaataggacatatacaatttgttaaattttaatttaatatttgaatttactcttattcagttgttatatgtgatattt 603  Q
    ||||||||| |||||||| ||||||||||| ||||||| |||||  |||||||||| |||| ||||||||  | || ||||||||| |||||    
T  27579556 aaatgataaggaaaaaatcggacatatacagtttgttacattttgctttaatatttaaattcactcttatctatttattatatgtgttattt 27579647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 532 - 604
Target Start/End: Complemental strand, 17504432 - 17504360
Alignment:
Q  532 gacatatacaatttgttaaattttaatttaatatttgaatttactcttattcagttgttatatgtgatatttg 604  Q
    |||||||||||||||||| |||||| |||||||||||| |||| | ||||  | |||||||||||| ||||||    
T  17504432 gacatatacaatttgttacattttattttaatatttgagtttatttttatctatttgttatatgtgttatttg 17504360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 506 - 574
Target Start/End: Complemental strand, 43879934 - 43879866
Alignment:
Q  506 tttttcaaatgataaagaaaaaataggacatatacaatttgttaaattttaatttaatatttgaattta 574  Q
    |||||||||||||||||| ||||| | ||||| ||||||| ||| |||||| |||||||||| ||||||    
T  43879934 tttttcaaatgataaagagaaaatcgaacatacacaatttattacattttattttaatatttaaattta 43879866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 552 - 610
Target Start/End: Original strand, 43416076 - 43416134
Alignment:
Q  552 ttttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcattga 610  Q
    ||||| ||| ||||||||||||||||||||  | |||||||||||| ||||||||||||    
T  43416076 ttttatttttatatttgaatttactcttatcaatttgttatatgtgttatttgcattga 43416134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 506 - 610
Target Start/End: Complemental strand, 48420424 - 48420319
Alignment:
Q  506 tttttcaaatgataaagaaaaaata-ggacatatacaatttgttaaattttaatttaatatttgaatttactcttattcagttgttatatgtgatatttg 604  Q
    ||||| ||||||||| ||||||| | |||||||| | || ||||| |||||  ||||||||||||||||||||||||  | |||||||| ||| || |||    
T  48420424 ttttttaaatgataaggaaaaaaaatggacatatgctatctgttacattttgttttaatatttgaatttactcttatctatttgttatacgtgttaattg 48420325  T
Q  605 cattga 610  Q
     |||||    
T  48420324 tattga 48420319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 643
Target Start/End: Complemental strand, 45752707 - 45752616
Alignment:
Q  552 ttttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcattgagaatgaagagtaattttggtaggagaaaaagtc 643  Q
    ||||| |||||||||| ||||||||| |||||| ||| |||||| | |||||  ||||| | | |||||||||||||  | |||||||||||    
T  45752707 ttttattttaatattttaatttactcatattcatttgctatatgcgctatttatattgaaagttaagagtaattttgaaaagagaaaaagtc 45752616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 312; Significance: 1e-175; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 61 - 571
Target Start/End: Original strand, 24622200 - 24622703
Alignment:
Q  61 aaattatcctctatttggattttagaatccgaactagtttaggattctaaaattccgaaacgagtccaaaacttgatggcaaccatctctgatttccatc 160  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||    
T  24622200 aaattatcctcaatttggattttagaatccaaactagtttaggattctaaaaatccgaaacgagtccaaaacttgatggcaaccatctttgattttcatc 24622299  T
Q  161 atttaacaagagtatggtgaaatcatgtacgaaatgtataatccggattttatttacgtgtttcagattgtatattccaaaatatcaactnnnnnnnnnn 260  Q
    |||||||| ||||||||||||| ||||| ||  |||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||              
T  24622300 atttaacaggagtatggtgaaaccatgtccgggatgtgtaatccgaattttatttacgtgtttcagattgtatatttcaaaatatcaacttaaaaaaaaa 24622399  T
Q  261 --cgg-caaacttataaattgtataatctgaaacacttaactatataaggttcatccataacctaggagaagttcatcacctttatcacctaacactccc 357  Q
      ||| |||||||||| |||||||||||| |||| |||||||||||||||||||||||||           ||||||||||||||||||||| |||||||    
T  24622400 aacggacaaacttatagattgtataatctaaaacgcttaactatataaggttcatccata-----------gttcatcacctttatcacctaccactccc 24622488  T
Q  358 tacacctctaaaaacatacaattttgagcgaaaacctgaattggagtagtaatctgatcaccaagggtcttttaaaacatcattttcgtatgaatgcaca 457  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  24622489 tacacctctaaaaacatacaattttgagcgaaaacatgagttggagtagtaatctggtcaccaaggggcttttaaaacatcattttcgtatgaatgcaca 24622588  T
Q  458 tgtaatgtttatataaattcaccctcattcgatttctaggcgatcttatttttcaaatgataaag-aaaaaataggacatatacaatttgttaaatttta 556  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| |||||||||||| ||||||||||||     
T  24622589 tgtaatgtttatataaattcaccctcattcgatttctaggcgctcttatttttcaaatgataaggaaaaaaattggacatatacaacttgttaaattttg 24622688  T
Q  557 atttaatatttgaat 571  Q
     ||||||||||||||    
T  24622689 ttttaatatttgaat 24622703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 571 - 854
Target Start/End: Original strand, 24631250 - 24631531
Alignment:
Q  571 tttactcttattcagttgttatatgtgatatttgcattgagaatgaagagtaattttggtaggagaaaaagtcggttcaatgacacgtggcaaacaagaa 670  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24631250 tttactcttatttagttgttatatgtgatatttgcattgagaatgaagagtaattttggtaggagaaaaagtcggttcaatgacacgtggcaaacaagaa 24631349  T
Q  671 ttaaacggttgacattgaaaaataactctttattactgttcctcttcttctcaaccatactatccacactcttcttctcctctcacgtttccttaactca 770  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  24631350 ttaaacggttgacattgaaaaataactctttactactgttcctcttcttctcaaccatactatc--cactcttcttctcctctcacgtttccttaactca 24631447  T
Q  771 ccatcttgtttccatcgaacttcctcacagccgccggaaaggcccatcgctccgccgcgaattgctgccgatgtaacctgttct 854  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24631448 ccatcttgtttccatcgaacttcctcacagccgccggaaaggcccatcgctccgccgcggattgctgccgatgtaacctgttct 24631531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 326 - 497
Target Start/End: Complemental strand, 31063893 - 31063723
Alignment:
Q  326 gaagttcatcacctttatcacctaacactccctacacctctaaaaacatacaattttgagcgaaaacctgaattggagtagtaatctgatcaccaagggt 425  Q
    |||||||| ||||||||||||| ||||||||||| ||| ||||||||| || ||||| ||||||||| ||| || |||||| |||||| ||| |||| |     
T  31063893 gaagttcaccacctttatcaccaaacactcccta-accgctaaaaacacaccattttaagcgaaaacgtgatttagagtagcaatctggtcatcaagagg 31063795  T
Q  426 cttttaaaacatcattttcgtatgaatgcacatgtaatgtttatataaattcaccctcattcgatttctagg 497  Q
    | |||| |||||||||||||| |||||||| |||||||| |||||||||  | |||||||||||||||||||    
T  31063794 cgtttacaacatcattttcgtgtgaatgcaaatgtaatgattatataaaacctccctcattcgatttctagg 31063723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 318 - 496
Target Start/End: Complemental strand, 17204014 - 17203841
Alignment:
Q  318 acctaggagaagttcatcacctttatcacctaacactccctacacctctaaaaacatacaattttgagcgaaaacctgaattggagtagtaatctgatca 417  Q
    |||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| | || ||||||  ||||| | ||| ||||||||| |||||| |||    
T  17204014 acctagaagaagttcatcacctttatcaccaaacactccatacacctccaaaaatacaccattttgcccgaaa-cgtgatttggagtagcaatctggtca 17203916  T
Q  418 ccaagggtcttttaaaacatcattttcgtatgaatgcacatgtaatgtttatataaattcaccctcattcgatttctag 496  Q
     ||||||   |||| ||||||||||| |||||    || | |||||||||| |||||  | |||||||||||| |||||    
T  17203915 tcaaggggagtttacaacatcatttttgtatg----caaaggtaatgtttacataaaacctccctcattcgatatctag 17203841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 506 - 580
Target Start/End: Original strand, 30841251 - 30841324
Alignment:
Q  506 tttttcaaatgataaagaaaaaataggacatatacaatttgttaaattttaatttaatatttgaatttactctta 580  Q
    ||||| ||||| |||| |||||||  |||||||||||||||||| |||||  |||||||||| ||||||||||||    
T  30841251 ttttttaaatggtaaa-aaaaaatcagacatatacaatttgttacattttgttttaatatttaaatttactctta 30841324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 522 - 643
Target Start/End: Original strand, 38098973 - 38099094
Alignment:
Q  522 gaaaaaataggacatatacaatttgttaaattttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcattgagaatgaagagt 621  Q
    |||||||| ||| |||||  ||| |||| |||||| ||||||||||||||||||||||||  | || | |||||||  ||||||||||| | |  || ||    
T  38098973 gaaaaaattggatatatatgattcgttacattttattttaatatttgaatttactcttatctatttatcatatgtgtgatttgcattgaaagttgagggt 38099072  T
Q  622 aattttggtaggagaaaaagtc 643  Q
    |||| ||  |||||||||||||    
T  38099073 aattctgaaaggagaaaaagtc 38099094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 506 - 640
Target Start/End: Original strand, 35583339 - 35583473
Alignment:
Q  506 tttttcaaatgataaagaaaaaataggacatatacaatttgttaaattttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgc 605  Q
    ||||| |||| |||| |||||||  ||||||| |||  |||||| |||||  | ||||||||||||||| ||||||    |||||||||||| ||||||     
T  35583339 ttttttaaataataaggaaaaaaatggacataaacagcttgttacattttgttataatatttgaatttaatcttatctttttgttatatgtgttatttgt 35583438  T
Q  606 attgagaatgaagagtaattttggtaggagaaaaa 640  Q
    ||||| ||| ||  |||||||| | | ||||||||    
T  35583439 attgaaaattaatggtaattttagaaagagaaaaa 35583473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 603
Target Start/End: Complemental strand, 25536505 - 25536460
Alignment:
Q  558 tttaatatttgaatttactcttattcagttgttatatgtgatattt 603  Q
    ||||||||||||||||| ||||||| | |||||||||||| |||||    
T  25536505 tttaatatttgaatttattcttatttatttgttatatgtgttattt 25536460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 3e-32; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 275 - 474
Target Start/End: Original strand, 10924083 - 10924282
Alignment:
Q  275 attgtataatctgaaacacttaactatataaggttcatccataacctaggagaagttcatcacctttatcacctaacactccctacacctctaaaaacat 374  Q
    |||||| ||||||||||  || | |||||||||| || ||| ||||||| ||||||| | |||| |||||| | ||||||| ||||| ||||||||||||    
T  10924083 attgtaaaatctgaaacctttgagtatataaggtccacccaaaacctagcagaagtttagcaccgttatcaacaaacactctctacatctctaaaaacat 10924182  T
Q  375 acaattttgagcgaaaacctgaattggagtagtaatctgatcaccaagggtcttttaaaacatcattttcgtatgaatgcacatgtaatgtttatataaa 474  Q
    || ||| ||||||||||| ||| || |||||| |||||| ||| ||||||||  ||| |||||||||||||  |||||| | | ||||||||||||||||    
T  10924183 accattatgagcgaaaacgtgatttagagtagcaatctggtcatcaagggtcgcttataacatcattttcgcctgaatgaaaaggtaatgtttatataaa 10924282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 317 - 494
Target Start/End: Original strand, 26602050 - 26602227
Alignment:
Q  317 aacctaggagaagttcatcacctttatcacctaacactccctacacctctaaaaacatacaattttgagcgaaaacctgaattggagtagtaatctgatc 416  Q
    ||||||| |||||||  |||||||||||||| ||||||| ||||||||| ||||||  ||||||||| |||||||| ||| ||||||| | ||| || |     
T  26602050 aacctagtagaagtttgtcacctttatcaccaaacactctctacacctccaaaaactcacaattttgggcgaaaacttgatttggagttgcaatttggta 26602149  T
Q  417 accaagggtcttttaaaacatcattttcgtatgaatgcacatgtaatgtttatataaattcaccctcattcgatttct 494  Q
    | |||||| | || | ||| ||||||| || |||||||| | ||||||||  ||||||  |  |||||||||||||||    
T  26602150 atcaaggggcgttaataacttcatttttgtctgaatgcaaaggtaatgttcctataaaaccttcctcattcgatttct 26602227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 299 - 474
Target Start/End: Original strand, 26885774 - 26885940
Alignment:
Q  299 tatataaggttcatccataacctaggagaagttcatcacctttatcacctaacactccctacacctctaaaaacatacaattttgagcgaaaacctgaat 398  Q
    |||||||||||   ||| ||| ||| ||||||||| ||||||||||||| ||||||||||||||          |||| ||||||||||||||| ||| |    
T  26885774 tatataaggtttgcccaaaacgtagtagaagttcaccacctttatcaccaaacactccctacac----------ataccattttgagcgaaaacgtgatt 26885863  T
Q  399 tggagtagtaatctgatcaccaagggtcttttaaaacatca-ttttcgtatgaatgcacatgtaatgtttatataaa 474  Q
    ||||||| ||||||| ||| |||||| | |||| ||||||| ||||||| |||||||| | ||||| ||||||||||    
T  26885864 tggagtaataatctggtcatcaaggggcgtttacaacatcatttttcgtctgaatgcaaaggtaatatttatataaa 26885940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 337 - 495
Target Start/End: Complemental strand, 28313645 - 28313488
Alignment:
Q  337 cctttatcacctaacactccctacacctctaaaaacatacaattttgagcgaaaacctgaattggagtagtaatctgatcaccaagggtcttttaaaaca 436  Q
    ||||||||||| |||| |||||||||||  ||||||| || ||||||  ||||||| ||| ||||||||| ||| |||||| ||| || | |||| ||||    
T  28313645 cctttatcaccaaacattccctacaccttaaaaaacacaccattttggtcgaaaacgtgatttggagtagcaatttgatcatcaaagggcgtttacaaca 28313546  T
Q  437 tcattttcgtatgaatgcacatgtaatgtttatataaattcaccctcattcgatttcta 495  Q
    ||||||| || |||||| | |||||||||| || ||||  | |||||||| ||||||||    
T  28313545 tcatttttgtctgaatgaaaatgtaatgttcatgtaaa-cctccctcatttgatttcta 28313488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 506 - 610
Target Start/End: Original strand, 31555644 - 31555746
Alignment:
Q  506 tttttcaaatgataaagaaaaaataggacatatacaatttgttaaattttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgc 605  Q
    ||||| ||||||||| |||||||| ||||||   |||||||||| |||||  |||||||||||||||||| |||||| | ||||||||| || ||||||     
T  31555644 ttttttaaatgataaggaaaaaatcggacatt--caatttgttacattttgttttaatatttgaatttacacttatttatttgttatatatgttatttgt 31555741  T
Q  606 attga 610  Q
    |||||    
T  31555742 attga 31555746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 250
Target Start/End: Original strand, 10923963 - 10924047
Alignment:
Q  166 acaagagtatggtgaaatcatgtacgaaatgtataatccggattttatttacgtgtttcagattgtatattccaaaatatcaact 250  Q
    ||||||||| ||||||| || || || || |||||||  | ||||||||||||||||| |||||||||||||| |||||||||||    
T  10923963 acaagagtagggtgaaaccacgtccggaaggtataatttgaattttatttacgtgttttagattgtatattccgaaatatcaact 10924047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 552 - 627
Target Start/End: Original strand, 21566032 - 21566107
Alignment:
Q  552 ttttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcattgagaatgaagagtaatttt 627  Q
    ||||| ||||||||||||||||||| ||||| | |||||||||||| |||||| ||| | ||| ||||||||||||    
T  21566032 ttttattttaatatttgaatttactattatttatttgttatatgtgttatttgtattaaaaattaagagtaatttt 21566107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 550 - 610
Target Start/End: Complemental strand, 42444459 - 42444399
Alignment:
Q  550 aattttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcattga 610  Q
    ||||||| |||||||||| |||||||||||||| | |||||||||||| |||||| |||||    
T  42444459 aattttattttaatatttaaatttactcttatttatttgttatatgtgctatttgtattga 42444399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 473
Target Start/End: Original strand, 26262592 - 26262739
Alignment:
Q  326 gaagttcatcacctttatcacctaacactccctacacctctaaaaacatacaattttgagcgaaaacctgaattggagtagtaatctgatcaccaagggt 425  Q
    |||||||| ||| ||||||||| |||| ||||||||||| || ||||| || |||||| || ||||  ||| ||||||||| |||||  |||  |||       
T  26262592 gaagttcaccacatttatcaccaaacagtccctacacctatataaacacaccattttgtgctaaaatttgatttggagtagcaatctagtcataaagttg 26262691  T
Q  426 cttttaaaacatcattttcgtatgaatgcacatgtaatgtttatataa 473  Q
    | || | ||||||||||| || |||||||| | ||||||| |||||||    
T  26262692 cgttaacaacatcatttttgtctgaatgcaaaggtaatgtgtatataa 26262739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 533 - 579
Target Start/End: Original strand, 17640942 - 17640988
Alignment:
Q  533 acatatacaatttgttaaattttaatttaatatttgaatttactctt 579  Q
    ||||||||||||| ||| |||||  ||||||||||||||||||||||    
T  17640942 acatatacaatttattacattttgttttaatatttgaatttactctt 17640988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 562 - 640
Target Start/End: Complemental strand, 37867508 - 37867430
Alignment:
Q  562 atatttgaatttactcttattcagttgttatatgtgatatttgcattgagaatgaagagtaattttggtaggagaaaaa 640  Q
    ||||||||||||||||||||| | |||||||||||| |||||  ||||| | |  || |||||||||| | ||||||||    
T  37867508 atatttgaatttactcttatttatttgttatatgtgttatttttattgaaagttgagggtaattttggaaagagaaaaa 37867430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 3e-26; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 299 - 495
Target Start/End: Complemental strand, 35310081 - 35309884
Alignment:
Q  299 tatataaggttcatccataacctaggagaagttcatcacctttatcacctaacactccctaca-cctctaaaaacatacaattttgagcgaaaacctgaa 397  Q
    ||||||||||||||||  ||||||| | ||||||| ||||||||||||  |||| |||||||| |||| ||||||| || ||||||  ||||||  |||     
T  35310081 tatataaggttcatccgaaacctagcaaaagttcaccacctttatcactaaacattccctacatcctccaaaaacacaccattttggacgaaaaagtgat 35309982  T
Q  398 ttggagtagtaatctgatcaccaagggtcttttaaaacatcattttcgtatgaatgcacatgtaatgtttatataaattcaccctcattcgatttcta 495  Q
    |||| |||| |||||| ||| |||||| | ||||  |||||||||| || |||||||| | ||||||||||||||||  | |||||||| ||||||||    
T  35309981 ttggggtagcaatctggtcatcaaggggcgtttactacatcatttttgtctgaatgcaaaggtaatgtttatataaaacctccctcatttgatttcta 35309884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 326 - 497
Target Start/End: Complemental strand, 11519175 - 11519005
Alignment:
Q  326 gaagttcatcacctttatcacctaacactccctacacctctaaaaacatacaattttgagcgaaaacctgaattggagtagtaatctgatcaccaagggt 425  Q
    |||||||  ||||||||||||| ||||||| ||||||||||||||||| || |||||| ||| |||| |   ||||| ||  ||| || ||| ||| ||     
T  11519175 gaagttcgccacctttatcacc-aacactctctacacctctaaaaacaaaccattttgggcggaaacgtagtttggaataacaatatggtcatcaaaggg 11519077  T
Q  426 cttttaaaacatcattttcgtatgaatgcacatgtaatgtttatataaattcaccctcattcgatttctagg 497  Q
    | |||  ||||||||||||||||| ||||| | ||||||||||||||||  | |||||||| ||||||||||    
T  11519076 catttgcaacatcattttcgtatgtatgcaaaggtaatgtttatataaaacctccctcatttgatttctagg 11519005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 552 - 629
Target Start/End: Complemental strand, 23267905 - 23267828
Alignment:
Q  552 ttttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcattgagaatgaagagtaattttgg 629  Q
    ||||| ||||||||||||||||||||||||  | |||||||||||| |||||| ||||| |||  |||||||||||||    
T  23267905 ttttattttaatatttgaatttactcttatctatttgttatatgtgttatttgtattgaaaatttagagtaattttgg 23267828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 532 - 610
Target Start/End: Original strand, 13475539 - 13475616
Alignment:
Q  532 gacatatacaatttgttaaattttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcattga 610  Q
    |||||||||||||| ||| |||||| |||||||||| ||||||||||||||   |||||||||||  ||||||||||||    
T  13475539 gacatatacaattttttacattttattttaatatttaaatttactcttatt-ttttgttatatgtactatttgcattga 13475616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 552 - 610
Target Start/End: Original strand, 19468231 - 19468289
Alignment:
Q  552 ttttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcattga 610  Q
    ||||| ||||||||||||||||||||||||  | |||||||||||| |||||| |||||    
T  19468231 ttttattttaatatttgaatttactcttatctaattgttatatgtgctatttgtattga 19468289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 558 - 610
Target Start/End: Original strand, 14770960 - 14771012
Alignment:
Q  558 tttaatatttgaatttactcttattcagttgttatatgtgatatttgcattga 610  Q
    ||||||||||||||||||||||||  | ||||||||| || ||||||||||||    
T  14770960 tttaatatttgaatttactcttatctatttgttatatatgttatttgcattga 14771012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 552 - 604
Target Start/End: Original strand, 49758590 - 49758642
Alignment:
Q  552 ttttaatttaatatttgaatttactcttattcagttgttatatgtgatatttg 604  Q
    ||||| ||||||||||||||||||||||||  | |||||||||||| ||||||    
T  49758590 ttttattttaatatttgaatttactcttatctatttgttatatgtgttatttg 49758642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 2e-24; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 506 - 640
Target Start/End: Complemental strand, 22701728 - 22701595
Alignment:
Q  506 tttttcaaatgataaagaaaaaataggacatatacaatttgttaaattttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgc 605  Q
    ||||| ||| ||||| ||||||| || ||||||||||||||||| |||||| ||||||||||||||||||||||||  | ||||||||||||||||| ||    
T  22701728 ttttttaaacgataaggaaaaaacag-acatatacaatttgttacattttattttaatatttgaatttactcttatctatttgttatatgtgatattcgc 22701630  T
Q  606 attgagaatgaagagtaattttggtaggagaaaaa 640  Q
    | ||| | |  || |||||||||| ||||||||||    
T  22701629 aatgaaagttgagggtaattttggaaggagaaaaa 22701595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 506 - 581
Target Start/End: Complemental strand, 48103130 - 48103055
Alignment:
Q  506 tttttcaaatgataaagaaaaaataggacatatacaatttgttaaattttaatttaatatttgaatttactcttat 581  Q
    ||||| ||||||||| |||||||||||| ||||| ||||||| | |||||  ||||||||||||||||||||||||    
T  48103130 tttttaaaatgataaggaaaaaataggatatatataatttgtcacattttgttttaatatttgaatttactcttat 48103055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 314 - 466
Target Start/End: Original strand, 10348626 - 10348778
Alignment:
Q  314 cataacctaggagaagttcatcacctttatcacctaacactccctacacctctaaaaacatacaattttgagcgaaaacctgaattggagtagtaatctg 413  Q
    |||||||||| | || |||  ||||||||||||| ||||||| ||||||| | ||||||| || |||||| | |||||| ||| ||||||||| |||||     
T  10348626 cataacctagaataatttcgccacctttatcaccaaacactctctacaccaccaaaaacacactattttgggagaaaacgtgatttggagtagcaatcta 10348725  T
Q  414 atcaccaagggtcttttaaaacatcattttcgtatgaatgcacatgtaatgtt 466  Q
     ||| |||||| | |  | ||||| |||||||| |||||||| | ||||||||    
T  10348726 gtcatcaaggggcgtcaacaacattattttcgtctgaatgcaaaggtaatgtt 10348778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 506 - 603
Target Start/End: Complemental strand, 1460516 - 1460418
Alignment:
Q  506 tttttcaaatgataaagaaaaaa-taggacatatacaatttgttaaattttaatttaatatttgaatttactcttattcagttgttatatgtgatattt 603  Q
    ||||||||||||||| ||||||| | | ||||||||||||| ||| |||||  || |||||||||||||||| ||||  | |||||||||||| |||||    
T  1460516 tttttcaaatgataaggaaaaaaatcgaacatatacaatttcttacattttgtttaaatatttgaatttactattatatatttgttatatgtgttattt 1460418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 325 - 495
Target Start/End: Complemental strand, 13588919 - 13588750
Alignment:
Q  325 agaagttcatcacctttatcacctaacactccctacacctctaaaaacatacaattttgagcgaaaacctgaattggagtagtaatctgatcaccaaggg 424  Q
    ||||||||| ||| ||||||||  || |||||||| ||||||| ||||| |  || ||| | |||||| ||| ||||||||  ||| || ||  |||||     
T  13588919 agaagttcaccacatttatcacgaaatactccctagacctctagaaacacatcatcttgggggaaaacttgatttggagtaacaatttggtcgtcaagga 13588820  T
Q  425 tcttttaaaacatcattttcgtatgaatgcacatgtaatgtttatataaattcaccctcattcgatttcta 495  Q
     | |||| |||||||||||||| |||||||| |||| ||||| |||||||  | |||||||||||||||||    
T  13588819 gcgtttacaacatcattttcgtctgaatgcaaatgt-atgttcatataaaacctccctcattcgatttcta 13588750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 552 - 610
Target Start/End: Complemental strand, 36251586 - 36251528
Alignment:
Q  552 ttttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcattga 610  Q
    ||||| ||||||||||||||||||||||||  | |||||||||||| |||||| |||||    
T  36251586 ttttattttaatatttgaatttactcttatctatttgttatatgtgttatttgtattga 36251528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 643
Target Start/End: Complemental strand, 39786416 - 39786331
Alignment:
Q  558 tttaatatttgaatttactcttattcagttgttatatgtgatatttgcattgagaatgaagagtaattttggtaggagaaaaagtc 643  Q
    ||||||||||||||||||||||||  | |||||||||||| |||||| ||||| | |  || ||| |||||| | |||||||||||    
T  39786416 tttaatatttgaatttactcttatctatttgttatatgtgttatttgtattgaaagttgagggtagttttggaaagagaaaaagtc 39786331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 610
Target Start/End: Complemental strand, 17038388 - 17038330
Alignment:
Q  552 ttttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcattga 610  Q
    ||||| ||||||||||||||||||||||||  | ||||||||||||  ||||| |||||    
T  17038388 ttttattttaatatttgaatttactcttatctatttgttatatgtgcaatttgtattga 17038330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 506 - 610
Target Start/End: Complemental strand, 9788663 - 9788559
Alignment:
Q  506 tttttcaaatgataaagaaaaaataggacatatacaatttgttaaattttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgc 605  Q
    ||||| ||||||||||||||||||  | |||||||||||||||| |||||  |||| |||||||||||||| ||||  | ||||||||| |  |||||||    
T  9788663 ttttttaaatgataaagaaaaaatcaggcatatacaatttgttacattttgttttattatttgaatttactattatctatttgttatatttcctatttgc 9788564  T
Q  606 attga 610  Q
    |||||    
T  9788563 attga 9788559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 506 - 610
Target Start/End: Complemental strand, 9187495 - 9187392
Alignment:
Q  506 tttttcaaatgataaagaaaaaataggacatatacaatttgttaaattttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgc 605  Q
    ||||| |||||||||  ||||||| ||||||||||| ||||||| |||||| ||||||||||||||||||  ||||  | ||||||||| || ||||||     
T  9187495 ttttttaaatgataat-aaaaaatcggacatatacagtttgttacattttattttaatatttgaatttacctttatctatttgttatatatgttatttgt 9187397  T
Q  606 attga 610  Q
    |||||    
T  9187396 attga 9187392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 610
Target Start/End: Complemental strand, 11941493 - 11941425
Alignment:
Q  543 tttgttaaa-ttttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcattga 610  Q
    ||||||||| ||||| ||||||||||||||||||||||||  | |||||||||||| |||||| |||||    
T  11941493 tttgttaaacttttattttaatatttgaatttactcttatctatttgttatatgtgttatttgtattga 11941425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 506 - 602
Target Start/End: Original strand, 24411960 - 24412056
Alignment:
Q  506 tttttcaaatgataaagaaaaaataggacatatacaatttgttaaattttaatttaatatttgaatttactcttattcagttgttatatgtgatatt 602  Q
    ||||| |||||||||  ||||||| | || |||||||||| ||| |||||  |||||||||||||||||| |||||  | |||||||||||| ||||    
T  24411960 ttttttaaatgataagaaaaaaatcgaacttatacaatttattacattttgttttaatatttgaatttacccttatctatttgttatatgtgttatt 24412056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 552 - 627
Target Start/End: Original strand, 11929810 - 11929885
Alignment:
Q  552 ttttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcattgagaatgaagagtaatttt 627  Q
    ||||| ||||||||||||||||||||||||  | |||||||||||| |||||| ||||| | | ||| ||||||||    
T  11929810 ttttattttaatatttgaatttactcttatctatttgttatatgtgttatttgtattgaaagttaagggtaatttt 11929885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 552 - 603
Target Start/End: Complemental strand, 42862523 - 42862472
Alignment:
Q  552 ttttaatttaatatttgaatttactcttattcagttgttatatgtgatattt 603  Q
    ||||| ||||||||||||||||||||||||| | |||||||||||| |||||    
T  42862523 ttttattttaatatttgaatttactcttatttatttgttatatgtgttattt 42862472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 552 - 610
Target Start/End: Original strand, 41666910 - 41666968
Alignment:
Q  552 ttttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcattga 610  Q
    ||||| |||||||||||||| ||||||||| || |||||||||||| |||||| |||||    
T  41666910 ttttattttaatatttgaatgtactcttatacatttgttatatgtgttatttgtattga 41666968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 392
Target Start/End: Complemental strand, 2078899 - 2078832
Alignment:
Q  325 agaagttcatcacctttatcacctaacactccctacacctctaaaaacatacaattttgagcgaaaac 392  Q
    |||||||| |||||||| ||||| ||||||||||| ||||  ||||||| |  |||||||||||||||    
T  2078899 agaagttcgtcacctttttcaccaaacactccctataccttcaaaaacacatcattttgagcgaaaac 2078832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 413
Target Start/End: Complemental strand, 9174114 - 9174037
Alignment:
Q  335 cacctttatcacctaacactccctacacctctaaaaacatacaattttgagcgaaaacctgaattggagtagtaatctg 413  Q
    ||||||||||||  ||||||||||||||||| ||||||| || |||| | |||||||| ||  ||||||||| ||||||    
T  9174114 cacctttatcaca-aacactccctacacctccaaaaacacaccatttagggcgaaaacatggtttggagtagcaatctg 9174037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 610
Target Start/End: Original strand, 15044473 - 15044531
Alignment:
Q  552 ttttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcattga 610  Q
    ||||| ||||||||||||||||| ||||||  | |||||||||||| |||||| |||||    
T  15044473 ttttattttaatatttgaatttaatcttatctatttgttatatgtgttatttgtattga 15044531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 506 - 574
Target Start/End: Original strand, 32345264 - 32345333
Alignment:
Q  506 tttttcaaatgataaagaaaaaata-ggacatatacaatttgttaaattttaatttaatatttgaattta 574  Q
    ||||| ||||||||| ||||||| | ||| ||||||||||  ||| |||||| |||||||||||||||||    
T  32345264 ttttttaaatgataaggaaaaaaaatggatatatacaattaattacattttattttaatatttgaattta 32345333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 506 - 574
Target Start/End: Original strand, 32361872 - 32361941
Alignment:
Q  506 tttttcaaatgataaagaaaaaata-ggacatatacaatttgttaaattttaatttaatatttgaattta 574  Q
    ||||| ||||||||| ||||||| | ||| ||||||||||  ||| |||||| |||||||||||||||||    
T  32361872 ttttttaaatgataaggaaaaaaaatggatatatacaattaattacattttattttaatatttgaattta 32361941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1017 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 506 - 643
Target Start/End: Original strand, 2379 - 2517
Alignment:
Q  506 tttttcaaatgataaagaaaaaa-taggacatatacaatttgttaaattttaatttaatatttgaatttactcttattcagttgttatatgtgatatttg 604  Q
    ||||| ||||||||| ||||||| | |||||||| |||||||||| |||||  ||||||||||| ||||| | ||||  | |||||||||||| ||||||    
T  2379 ttttttaaatgataaggaaaaaaatcggacatatgcaatttgttacattttgttttaatatttgtatttatttttatctatttgttatatgtgttatttg 2478  T
Q  605 cattgaga-atgaagagtaattttggtaggagaaaaagtc 643  Q
     ||||||| ||| || |||||||||  |||||||||||||    
T  2479 tattgagagatg-agggtaattttgaaaggagaaaaagtc 2517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 552 - 643
Target Start/End: Complemental strand, 23124314 - 23124223
Alignment:
Q  552 ttttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcattgagaatgaagagtaattttggtaggagaaaaagtc 643  Q
    ||||| || |||||||||||||||||||||  | |||||||||||| |||||| ||||| ||| ||| |||||||||| | |||||||||||    
T  23124314 ttttatttcaatatttgaatttactcttatctatttgttatatgtgctatttgtattgaaaattaagggtaattttggaaagagaaaaagtc 23124223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 506 - 610
Target Start/End: Original strand, 4965679 - 4965783
Alignment:
Q  506 tttttcaaatgataaagaaaaaataggacatatacaatttgttaaattttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgc 605  Q
    ||||| ||||||||| |||||||  | ||||||||||||| ||| ||| || |||||||||| | |||| | ||||  | |||||||||||| ||||||     
T  4965679 tttttaaaatgataaggaaaaaactgaacatatacaatttattacattctattttaatatttaagtttagttttatctatttgttatatgtgctatttgt 4965778  T
Q  606 attga 610  Q
    |||||    
T  4965779 attga 4965783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 543 - 627
Target Start/End: Original strand, 30254506 - 30254590
Alignment:
Q  543 tttgttaaattttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcattgagaatgaagagtaatttt 627  Q
    ||||||| | |||| |||||||||| |||||||| ||||| | |||||||||||| |||||| ||| | ||| ||| ||||||||    
T  30254506 tttgttacactttattttaatatttaaatttacttttatttatttgttatatgtgttatttgtattaaaaattaagggtaatttt 30254590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 610
Target Start/End: Original strand, 13240894 - 13240952
Alignment:
Q  552 ttttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcattga 610  Q
    ||||| ||||||||||||||||||||||||  | ||||||||| || |||||| |||||    
T  13240894 ttttattttaatatttgaatttactcttatctatttgttatatatgttatttgtattga 13240952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 558 - 604
Target Start/End: Complemental strand, 30591151 - 30591105
Alignment:
Q  558 tttaatatttgaatttactcttattcagttgttatatgtgatatttg 604  Q
    ||||||||||||||||||| ||||| | |||||||||||| ||||||    
T  30591151 tttaatatttgaatttacttttatttatttgttatatgtgttatttg 30591105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 602
Target Start/End: Complemental strand, 31994400 - 31994350
Alignment:
Q  552 ttttaatttaatatttgaatttactcttattcagttgttatatgtgatatt 602  Q
    ||||| ||||||||||||||||||| ||||| | |||||||||||| ||||    
T  31994400 ttttattttaatatttgaatttacttttatttatttgttatatgtgttatt 31994350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 627
Target Start/End: Original strand, 3834073 - 3834142
Alignment:
Q  558 tttaatatttgaatttactcttattcagttgttatatgtgatatttgcattgagaatgaagagtaatttt 627  Q
    |||||||||| |||||| ||||||  | |||||| ||||| |||||||||||| ||| ||||||| ||||    
T  3834073 tttaatatttaaatttattcttatctatttgttacatgtgttatttgcattgaaaatcaagagtattttt 3834142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 628
Target Start/End: Original strand, 31204248 - 31204325
Alignment:
Q  552 ttttaatttaatatttgaatttactcttattcagttg-ttatatgtgatatttgcattgagaatgaagagtaattttg 628  Q
    ||||| |||||||||| ||||||||| |||  | ||| |||||||||||||| ||||||| |||  ||||||||||||    
T  31204248 ttttattttaatatttaaatttactcctatctatttgattatatgtgatattagcattgaaaattgagagtaattttg 31204325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 523 - 610
Target Start/End: Complemental strand, 19545504 - 19545417
Alignment:
Q  523 aaaaaataggacatatacaatttgttaaattttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcattga 610  Q
    |||||||  |||||||||| ||||||| |||||| |||||||||| |||||||||||||  | || ||||||||| ||||||||||||    
T  19545504 aaaaaatcagacatatacagtttgttacattttattttaatatttaaatttactcttatatatttcttatatgtgctatttgcattga 19545417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 506 - 610
Target Start/End: Complemental strand, 4609306 - 4609202
Alignment:
Q  506 tttttcaaatgataaagaaaaaataggacatatacaatttgttaaattttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgc 605  Q
    ||||| ||||||||| |||||| |  |||||||| |||||| || |||||  || |||||||||||||||||||||  | ||||||||| |||||||||     
T  4609306 ttttttaaatgataacgaaaaattcagacatataaaatttgatacattttgtttgaatatttgaatttactcttatctatttgttatatatgatatttga 4609207  T
Q  606 attga 610  Q
    |||||    
T  4609206 attga 4609202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 552 - 643
Target Start/End: Original strand, 26510422 - 26510513
Alignment:
Q  552 ttttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcattgagaatgaagagtaattttggtaggagaaaaagtc 643  Q
    ||||| ||||||||||||||||||||||||  | ||||||||||||||||||| ||||| | |  |||||| |||||  | |||||||||||    
T  26510422 ttttattttaatatttgaatttactcttatctatttgttatatgtgatatttgtattgaaagttgagagtagttttgaaaagagaaaaagtc 26510513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 537 - 608
Target Start/End: Complemental strand, 54983167 - 54983096
Alignment:
Q  537 atacaatttgttaaattttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcatt 608  Q
    ||||||||||||| |||||  ||||||||||||||||||||||||  | |||||||||||  ||||||||||    
T  54983167 atacaatttgttacattttgttttaatatttgaatttactcttatctatttgttatatgtattatttgcatt 54983096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 558 - 643
Target Start/End: Complemental strand, 53451122 - 53451037
Alignment:
Q  558 tttaatatttgaatttactcttattcagttgttatatgtgatatttgcattgagaatgaagagtaattttggtaggagaaaaagtc 643  Q
    ||||||||||||||||||||||||  | |||||||||||| |||||| ||||| | |  || |||||||||| | |||||||||||    
T  53451122 tttaatatttgaatttactcttatctatttgttatatgtgttatttgtattgaaagttgagggtaattttgggaagagaaaaagtc 53451037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 558 - 629
Target Start/End: Original strand, 34409964 - 34410035
Alignment:
Q  558 tttaatatttgaatttactcttattcagttgttatatgtgatatttgcattgagaatgaagagtaattttgg 629  Q
    ||||||||||||||||||||||||  | |||||||||||| |||||| ||||| | |  |||||||||||||    
T  34409964 tttaatatttgaatttactcttatctatttgttatatgtgttatttgtattgaaagttgagagtaattttgg 34410035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 558 - 610
Target Start/End: Original strand, 47044470 - 47044522
Alignment:
Q  558 tttaatatttgaatttactcttattcagttgttatatgtgatatttgcattga 610  Q
    ||||||||||||||||||||||||  | |||||||||||| |||||| |||||    
T  47044470 tttaatatttgaatttactcttatatatttgttatatgtgctatttgtattga 47044522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 506 - 610
Target Start/End: Complemental strand, 24637846 - 24637741
Alignment:
Q  506 tttttcaaatgataaaga-aaaaataggacatatacaatttgttaaattttaatttaatatttgaatttactcttattcagttgttatatgtgatatttg 604  Q
    ||||| ||||||||| || ||||||  || ||||||||||||||| |||    || |||||||||||||||||||||  | ||||| |||||| ||||||    
T  24637846 ttttttaaatgataaggataaaaatcagagatatacaatttgttacattgggtttcaatatttgaatttactcttatctatttgttgtatgtgttatttg 24637747  T
Q  605 cattga 610  Q
     |||||    
T  24637746 tattga 24637741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 514 - 643
Target Start/End: Complemental strand, 101434 - 101305
Alignment:
Q  514 atgataaagaaaaaataggacatatacaatttgttaaattttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcattgagaa 613  Q
    ||||||| ||||||||   ||||||| ||||||||| |||||| ||  ||||||||||||||| ||||  | |||||||||||| |||||| ||||| |     
T  101434 atgataaggaaaaaatcaaacatatataatttgttacattttatttagatatttgaatttactattatctatttgttatatgtgttatttgtattgatag 101335  T
Q  614 tgaagagtaattttggtaggagaaaaagtc 643  Q
    |  ||||||||||||| || | ||||||||    
T  101334 ttgagagtaattttggaagaaaaaaaagtc 101305  T

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Target: scaffold0128 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 552 - 610
Target Start/End: Original strand, 43308 - 43366
Alignment:
Q  552 ttttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcattga 610  Q
    ||||| ||||||||||||||||||||||||| | |||||||||| | ||||||||||||    
T  43308 ttttattttaatatttgaatttactcttatttatttgttatatgcgttatttgcattga 43366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 610
Target Start/End: Original strand, 32809 - 32867
Alignment:
Q  552 ttttaatttaatatttgaatttactcttattcagttgttatatgtgatatttgcattga 610  Q
    ||||| ||||||||||||||||||||||||  | || ||||||||| |||||| |||||    
T  32809 ttttattttaatatttgaatttactcttatctatttattatatgtgttatttgtattga 32867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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