View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3906_low_14 (Length: 454)

Name: NF3906_low_14
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3906_low_14
NF3906_low_14
[»] chr6 (2 HSPs)
chr6 (14-441)||(2764650-2765084)
chr6 (273-360)||(21885163-21885248)
[»] chr7 (1 HSPs)
chr7 (265-360)||(43494935-43495030)
[»] chr4 (3 HSPs)
chr4 (265-357)||(29524963-29525053)
chr4 (265-352)||(37594200-37594287)
chr4 (273-353)||(35947391-35947471)
[»] chr5 (3 HSPs)
chr5 (265-357)||(40926240-40926330)
chr5 (282-360)||(27636835-27636913)
chr5 (319-360)||(11063419-11063459)
[»] chr1 (2 HSPs)
chr1 (305-358)||(3010163-3010216)
chr1 (94-152)||(23334190-23334248)
[»] chr2 (1 HSPs)
chr2 (265-360)||(11029935-11030030)


Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 441
Target Start/End: Original strand, 2764650 - 2765084
Alignment:
Q  14 ggagaaaggtcaagagagtcccttcaaaatactattttccccactctctgtataaaagagtgttcccttnnnnnnnn--taaatt------gaaagagct 105  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||          ||||||      |||||||||    
T  2764650 ggagaaaggtcaagagagtcccttcaaaatactattttccccatcctctgtataaaagagtgttcccttaaaaataaaataaattttttttgaaagagct 2764749  T
Q  106 agataatcgaagcccaaatcatgataaaggaaaaaacagtaccataagtccgtaaacaatttctttannnnnnnatacctctctttttgcacttctactt 205  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||       |||||||||||||||||||| ||||     
T  2764750 agataatcgaagcccaaattatgataaaggaaaaaactgtaccataagtccgtaaacaatttctttatttttt-atacctctctttttgcacttatactg 2764848  T
Q  206 atataaatgtcgcaatacaaaattttggctacacacaaatggnnnnnnnnnnnnnnnnntaatttcgtcacatcatttaacattgtttgattattttctc 305  Q
    |||||||||||||||||||||||||||| |||||| ||||||                 |||||| ||||||||||||||||||||||||||||||||||    
T  2764849 atataaatgtcgcaatacaaaattttgggtacacaaaaatggaaaaaataaaagaaaaataattttgtcacatcatttaacattgtttgattattttctc 2764948  T
Q  306 tttaaattttgtgtaactatgtgagtgtacccaaacatattttatttgggtttgtattatccaaataagtatttctcctctagggtatagtggcgggggc 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2764949 tttaaattttgtgtaactatgtgagtgtacccaaacatattttatttggatttgtattatccaaataagtatttctcctctagggtatagtggcgggggc 2765048  T
Q  406 gaacttgcttgctttaggcttactgtgactattact 441  Q
    ||||||||||||||||||||||||||||||||||||    
T  2765049 gaacttgcttgctttaggcttactgtgactattact 2765084  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 360
Target Start/End: Complemental strand, 21885248 - 21885163
Alignment:
Q  273 tcacatcatttaacattgtttgattattttctctttaaattttgtgtaactatgtgagtgtacccaaacatattttatttgggtttgt 360  Q
    |||||||| |||||| | ||| ||| ||||||||||||||||||| || |||  |||||||   |||||||||||||| |||||||||    
T  21885248 tcacatcagttaacactatttaattcttttctctttaaattttgtatatcta--tgagtgtgttcaaacatattttatatgggtttgt 21885163  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 265 - 360
Target Start/End: Original strand, 43494935 - 43495030
Alignment:
Q  265 taatttcgtcacatcatttaacattgtttgattattttctctttaaattttgtgtaactatgtgagtgtacccaaacatattttatttgggtttgt 360  Q
    |||||| |||||||||||||| ||| ||| ||| |||| | ||||||||||||||||||| ||||||||  ||||| ||| |||||||||||||||    
T  43494935 taatttagtcacatcatttaagattatttaatttttttttttttaaattttgtgtaactaagtgagtgtgtccaaatataatttatttgggtttgt 43495030  T

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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 265 - 357
Target Start/End: Original strand, 29524963 - 29525053
Alignment:
Q  265 taatttcgtcacatcatttaacattgtttgattattttctctttaaattttgtgtaactatgtgagtgtacccaaacatattttatttgggtt 357  Q
    |||||| | |||||||||||||| | ||| ||| |||||||||||||||  |||| |||||||||||||| ||||||||| ||||||||||||    
T  29524963 taatttagacacatcatttaacactatttaattcttttctctttaaatt--gtgttactatgtgagtgtatccaaacataatttatttgggtt 29525053  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 352
Target Start/End: Complemental strand, 37594287 - 37594200
Alignment:
Q  265 taatttcgtcacatcatttaacattgtttgattattttctctttaaattttgtgtaactatgtgagtgtacccaaacatattttattt 352  Q
    |||||| |||| |||| |||||||| ||| ||||||||||||||||||||| |||   |||||||||||   ||||||||||||||||    
T  37594287 taatttagtcatatcaattaacattatttaattattttctctttaaattttttgtgtgtatgtgagtgtgttcaaacatattttattt 37594200  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 353
Target Start/End: Original strand, 35947391 - 35947471
Alignment:
Q  273 tcacatcatttaacattgtttgattattttctctttaaattttgtgtaactatgtgagtgtacccaaacatattttatttg 353  Q
    |||||||||||||||   ||| |||||||||| |||||| ||| | || | ||||||||||  ||||||||||||||||||    
T  35947391 tcacatcatttaacaccatttaattattttctgtttaaaatttatatatccatgtgagtgtgtccaaacatattttatttg 35947471  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 357
Target Start/End: Complemental strand, 40926330 - 40926240
Alignment:
Q  265 taatttcgtcacatcatttaacattgtttgattattttctctttaaattttgtgtaactatgtgagtgtacccaaacatattttatttgggtt 357  Q
    |||||| ||||||||||||| || | ||| ||| |||| |||||||||||||||||||||||||||||  | |||||||| ||||||| ||||    
T  40926330 taatttagtcacatcatttaccactatttaattcttttttctttaaattttgtgtaactatgtgagtg--cacaaacataatttatttaggtt 40926240  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 360
Target Start/End: Complemental strand, 27636913 - 27636835
Alignment:
Q  282 ttaacattgtttgattattttctctttaaattttgtgtaactatgtgagtgtacccaaacatattttatttgggtttgt 360  Q
    |||| ||| ||| ||||||||||||||| ||||||||||||| ||||| | |   |||||||| |||||||| ||||||    
T  27636913 ttaatattatttaattattttctctttagattttgtgtaactttgtgattttgttcaaacataatttatttgagtttgt 27636835  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 360
Target Start/End: Complemental strand, 11063459 - 11063419
Alignment:
Q  319 taactatgtgagtgtacccaaacatattttatttgggtttgt 360  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  11063459 taactatgtgagtgtgcc-aaacatattttatttgggtttgt 11063419  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 358
Target Start/End: Original strand, 3010163 - 3010216
Alignment:
Q  305 ctttaaattttgtgtaactatgtgagtgtacccaaacatattttatttgggttt 358  Q
    ||||||||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  3010163 ctttaaattttgtgtaactatgtgaatgtgcccagacatattttatttgggttt 3010216  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 23334190 - 23334248
Alignment:
Q  94 attgaaagagctagataatcgaagcccaaatcatgataaaggaaaaaacagtaccataa 152  Q
    ||||||||||||| |||||| || ||||||| ||||| |||||||||| ||||||||||    
T  23334190 attgaaagagctaaataatcaaatcccaaattatgatgaaggaaaaaatagtaccataa 23334248  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 360
Target Start/End: Complemental strand, 11030030 - 11029935
Alignment:
Q  265 taatttcgtcacatcatttaacattgtttgattattttctctttaaattttgtgtaactatgtgagtgtacccaaacatattttatttgggtttgt 360  Q
    |||||| |||||||||||||| | | |||  || |||||||||||||||||||| ||| |||| ||||| || ||||||| |||||||| ||||||    
T  11030030 taatttagtcacatcatttaatactatttagttcttttctctttaaattttgtggaaccatgttagtgtgcctaaacataatttatttgagtttgt 11029935  T

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