View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3906_low_17 (Length: 431)

Name: NF3906_low_17
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3906_low_17
NF3906_low_17
[»] chr7 (8 HSPs)
chr7 (138-220)||(26771458-26771539)
chr7 (353-412)||(42818542-42818601)
chr7 (172-206)||(17272662-17272696)
chr7 (353-391)||(30581276-30581314)
chr7 (351-390)||(7329079-7329118)
chr7 (357-391)||(36611555-36611589)
chr7 (342-391)||(46491698-46491747)
chr7 (353-389)||(17114145-17114181)
[»] scaffold0271 (1 HSPs)
scaffold0271 (135-218)||(16899-16981)
[»] chr1 (7 HSPs)
chr1 (172-215)||(20239063-20239106)
chr1 (352-391)||(26240881-26240920)
chr1 (353-391)||(16449555-16449593)
chr1 (353-391)||(16459129-16459167)
chr1 (350-391)||(2261553-2261594)
chr1 (346-391)||(24848436-24848481)
chr1 (353-401)||(27746158-27746206)
[»] chr4 (7 HSPs)
chr4 (355-412)||(42793518-42793575)
chr4 (353-403)||(42792775-42792825)
chr4 (343-391)||(47157389-47157437)
chr4 (352-391)||(34450814-34450853)
chr4 (354-389)||(47156634-47156669)
chr4 (352-390)||(34941501-34941539)
chr4 (351-391)||(14527586-14527626)
[»] chr2 (5 HSPs)
chr2 (352-391)||(20606931-20606970)
chr2 (354-391)||(44297424-44297461)
chr2 (352-391)||(10173935-10173974)
chr2 (353-390)||(44296860-44296897)
chr2 (353-389)||(44986812-44986848)
[»] chr5 (5 HSPs)
chr5 (354-412)||(39467628-39467686)
chr5 (353-391)||(39937916-39937954)
chr5 (352-391)||(39466884-39466923)
chr5 (353-391)||(27345929-27345967)
chr5 (346-391)||(2029057-2029102)
[»] chr8 (6 HSPs)
chr8 (351-391)||(202575-202615)
chr8 (351-391)||(317412-317452)
chr8 (351-391)||(42094754-42094794)
chr8 (344-391)||(42094000-42094047)
chr8 (351-390)||(42664008-42664047)
chr8 (355-391)||(36180689-36180725)
[»] chr3 (10 HSPs)
chr3 (348-391)||(20807932-20807975)
chr3 (352-391)||(54753576-54753615)
chr3 (353-391)||(55337-55375)
chr3 (353-391)||(18745380-18745418)
chr3 (353-391)||(47571949-47571987)
chr3 (358-391)||(54308458-54308491)
chr3 (353-397)||(17353802-17353846)
chr3 (355-391)||(29516559-29516595)
chr3 (359-403)||(51920720-51920764)
chr3 (351-391)||(53346506-53346546)
[»] scaffold0627 (1 HSPs)
scaffold0627 (359-397)||(6470-6508)
[»] chr6 (2 HSPs)
chr6 (303-352)||(352150-352200)
chr6 (351-391)||(2138475-2138515)


Alignment Details
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 26771539 - 26771458
Alignment:
Q  138 aattttttgttttaataaaagccacgtnnnnnnntgtattgaggggtgtacacaaaagagtggtctatctatattttctctta 220  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26771539 aattttttgttttaataaaagccacgtgggggg-tgtattgaggggtgtacacaaaagagtggtctatctatattttctctta 26771458  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 353 - 412
Target Start/End: Complemental strand, 42818601 - 42818542
Alignment:
Q  353 ggtgaattctagggtgagggttcagttaagtccctcacccatggatcacttacaataaca 412  Q
    |||||||||||||||||||||||| ||||||||||||||  ||||||||||| |||||||    
T  42818601 ggtgaattctagggtgagggttcaattaagtccctcaccggtggatcacttataataaca 42818542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 17272696 - 17272662
Alignment:
Q  172 tgtattgaggggtgtacacaaaagagtggtctatc 206  Q
    |||||||||||||||||||||||||||||||||||    
T  17272696 tgtattgaggggtgtacacaaaagagtggtctatc 17272662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 391
Target Start/End: Complemental strand, 30581314 - 30581276
Alignment:
Q  353 ggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  30581314 ggtgaattctagggtgagggttcaattaagtccctcacc 30581276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 390
Target Start/End: Complemental strand, 7329118 - 7329079
Alignment:
Q  351 aaggtgaattctagggtgagggttcagttaagtccctcac 390  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  7329118 aaggtgacttctagggtgagggttcaattaagtccctcac 7329079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 391
Target Start/End: Original strand, 36611555 - 36611589
Alignment:
Q  357 aattctagggtgagggttcagttaagtccctcacc 391  Q
    |||||||||||||||||||| ||||||||||||||    
T  36611555 aattctagggtgagggttcaattaagtccctcacc 36611589  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 46491747 - 46491698
Alignment:
Q  342 ttttaaaagaaggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    ||||||||  ||||| |||||||||||||||||||  |||||||||||||    
T  46491747 ttttaaaaacaggtggattctagggtgagggttcaactaagtccctcacc 46491698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 389
Target Start/End: Original strand, 17114145 - 17114181
Alignment:
Q  353 ggtgaattctagggtgagggttcagttaagtccctca 389  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  17114145 ggtggattctagggtgagggttcaattaagtccctca 17114181  T

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Target: scaffold0271 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 16899 - 16981
Alignment:
Q  135 cataattttttgttttaataaaagccacgtnnnnnnntgtattgaggggtgtacacaaaagagtggtctatctatattttctct 218  Q
    |||||||||||||||||||||||||| |||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  16899 cataattttttgttttaataaaagccgcgtgggggg-tgtattgaggggtgtacacaaaagagtggtctatctatattttctct 16981  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 20239106 - 20239063
Alignment:
Q  172 tgtattgaggggtgtacacaaaagagtggtctatctatattttc 215  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  20239106 tgtattgaggggtgtacataaaagagtggtctatctatattttc 20239063  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 391
Target Start/End: Complemental strand, 26240920 - 26240881
Alignment:
Q  352 aggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    ||||| ||||||||||||||||||| ||||||||||||||    
T  26240920 aggtggattctagggtgagggttcaattaagtccctcacc 26240881  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 391
Target Start/End: Original strand, 16449555 - 16449593
Alignment:
Q  353 ggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  16449555 ggtggattctagggtgagggttcaattaagtccctcacc 16449593  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 391
Target Start/End: Original strand, 16459129 - 16459167
Alignment:
Q  353 ggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  16459129 ggtggattctagggtgagggttcaattaagtccctcacc 16459167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 391
Target Start/End: Complemental strand, 2261594 - 2261553
Alignment:
Q  350 gaaggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||    
T  2261594 gaaggtgaattttagggtgagggttcaattaagcccctcacc 2261553  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 391
Target Start/End: Complemental strand, 24848481 - 24848436
Alignment:
Q  346 aaaagaaggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    |||| |||||| ||||||||||||||||||  ||||||||||||||    
T  24848481 aaaacaaggtggattctagggtgagggttctattaagtccctcacc 24848436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 401
Target Start/End: Complemental strand, 27746206 - 27746158
Alignment:
Q  353 ggtgaattctagggtgagggttcagttaagtccctcacccatggatcac 401  Q
    |||| ||||||| ||||||||||| ||||||||||||||  ||||||||    
T  27746206 ggtggattctagcgtgagggttcaattaagtccctcaccagtggatcac 27746158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 412
Target Start/End: Complemental strand, 42793575 - 42793518
Alignment:
Q  355 tgaattctagggtgagggttcagttaagtccctcacccatggatcacttacaataaca 412  Q
    ||||||||||| ||||| |||| |||||||||||||| |||||||||||| |||||||    
T  42793575 tgaattctaggatgaggattcaattaagtccctcaccgatggatcacttataataaca 42793518  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 403
Target Start/End: Original strand, 42792775 - 42792825
Alignment:
Q  353 ggtgaattctagggtgagggttcagttaagtccctcacccatggatcactt 403  Q
    |||| |||||||||||||||| || |||||||||||||| |||||||||||    
T  42792775 ggtggattctagggtgagggtccaattaagtccctcaccgatggatcactt 42792825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 47157437 - 47157389
Alignment:
Q  343 tttaaaagaaggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    ||||||| | |||||||||||||||||||||||| |||| |||||||||    
T  47157437 tttaaaaaacggtgaattctagggtgagggttcaattaaatccctcacc 47157389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 391
Target Start/End: Original strand, 34450814 - 34450853
Alignment:
Q  352 aggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  34450814 aggtgaattctagggtgagggatcaattaagtccctcacc 34450853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 389
Target Start/End: Original strand, 47156634 - 47156669
Alignment:
Q  354 gtgaattctagggtgagggttcagttaagtccctca 389  Q
    ||||||||||||||||||||||| ||||||||||||    
T  47156634 gtgaattctagggtgagggttcaattaagtccctca 47156669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 390
Target Start/End: Original strand, 34941501 - 34941539
Alignment:
Q  352 aggtgaattctagggtgagggttcagttaagtccctcac 390  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  34941501 aggtggattctagggtgagggttcaattaagtccctcac 34941539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 14527626 - 14527586
Alignment:
Q  351 aaggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    |||||| ||||||||||||||| ||| ||||||||||||||    
T  14527626 aaggtggattctagggtgagggatcaattaagtccctcacc 14527586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 391
Target Start/End: Complemental strand, 20606970 - 20606931
Alignment:
Q  352 aggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  20606970 aggtgaattctagggtgagggttcaattaagtccctcacc 20606931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 391
Target Start/End: Complemental strand, 44297461 - 44297424
Alignment:
Q  354 gtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  44297461 gtgaattctagggtgagggttcaattaagtccctcacc 44297424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 391
Target Start/End: Original strand, 10173935 - 10173974
Alignment:
Q  352 aggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    ||||| |||||||||||||||||| |||||||||||||||    
T  10173935 aggtggattctagggtgagggttctgttaagtccctcacc 10173974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Original strand, 44296860 - 44296897
Alignment:
Q  353 ggtgaattctagggtgagggttcagttaagtccctcac 390  Q
    ||||||||||||||||||||| || |||||||||||||    
T  44296860 ggtgaattctagggtgagggtccaattaagtccctcac 44296897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 389
Target Start/End: Original strand, 44986812 - 44986848
Alignment:
Q  353 ggtgaattctagggtgagggttcagttaagtccctca 389  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  44986812 ggtgaattctagggtgagggatcaattaagtccctca 44986848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 412
Target Start/End: Complemental strand, 39467686 - 39467628
Alignment:
Q  354 gtgaattctagggtgagggttcagttaagtccctcacccatggatcacttacaataaca 412  Q
    ||||||||||||||||||||| | |||||||||||| |  ||||||||||| |||||||    
T  39467686 gtgaattctagggtgagggtttaattaagtccctcatcggtggatcacttataataaca 39467628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 391
Target Start/End: Complemental strand, 39937954 - 39937916
Alignment:
Q  353 ggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  39937954 ggtggattctagggtgagggttcagttaagtccctcacc 39937916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 391
Target Start/End: Original strand, 39466884 - 39466923
Alignment:
Q  352 aggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  39466884 aggtgaattctagggtgagggtccaattaagtccctcacc 39466923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 391
Target Start/End: Complemental strand, 27345967 - 27345929
Alignment:
Q  353 ggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  27345967 ggtggattctagggtgagggttcaattaagtccctcacc 27345929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 391
Target Start/End: Complemental strand, 2029102 - 2029057
Alignment:
Q  346 aaaagaaggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    |||| |||||| ||||||||||||||| ||| ||||||||||||||    
T  2029102 aaaaaaaggtggattctagggtgagggctcaattaagtccctcacc 2029057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 202575 - 202615
Alignment:
Q  351 aaggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  202575 aaggtgaattctaggatgagggttcaattaagtccctcacc 202615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 317412 - 317452
Alignment:
Q  351 aaggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  317412 aaggtgaattctaggatgagggttcaattaagtccctcacc 317452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 42094794 - 42094754
Alignment:
Q  351 aaggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  42094794 aaggtgaattctagggtgagggatcaattaagtccctcacc 42094754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 391
Target Start/End: Original strand, 42094000 - 42094047
Alignment:
Q  344 ttaaaagaaggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    |||||| |||||| ||||||||||||||| ||| ||||||||||||||    
T  42094000 ttaaaaaaaggtggattctagggtgagggatcaattaagtccctcacc 42094047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 390
Target Start/End: Complemental strand, 42664047 - 42664008
Alignment:
Q  351 aaggtgaattctagggtgagggttcagttaagtccctcac 390  Q
    |||||||||| ||||||||||||||| |||||||||||||    
T  42664047 aaggtgaattttagggtgagggttcaattaagtccctcac 42664008  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 36180689 - 36180725
Alignment:
Q  355 tgaattctagggtgagggttcagttaagtccctcacc 391  Q
    |||||||||||||||||||| | ||||||||||||||    
T  36180689 tgaattctagggtgagggtttaattaagtccctcacc 36180725  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 391
Target Start/End: Original strand, 20807932 - 20807975
Alignment:
Q  348 aagaaggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    |||| |||| ||||||||||||||||||| ||||||||||||||    
T  20807932 aagatggtggattctagggtgagggttcaattaagtccctcacc 20807975  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 391
Target Start/End: Original strand, 54753576 - 54753615
Alignment:
Q  352 aggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  54753576 aggtgaattctacggtgagggttcaattaagtccctcacc 54753615  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 391
Target Start/End: Complemental strand, 55375 - 55337
Alignment:
Q  353 ggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  55375 ggtgaattctaggatgagggttcaattaagtccctcacc 55337  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 391
Target Start/End: Complemental strand, 18745418 - 18745380
Alignment:
Q  353 ggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  18745418 ggtgaattctagggtgagggttcaatcaagtccctcacc 18745380  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 391
Target Start/End: Complemental strand, 47571987 - 47571949
Alignment:
Q  353 ggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  47571987 ggtgaattctagggtgagggatcaattaagtccctcacc 47571949  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 391
Target Start/End: Original strand, 54308458 - 54308491
Alignment:
Q  358 attctagggtgagggttcagttaagtccctcacc 391  Q
    ||||||||||||||||||| ||||||||||||||    
T  54308458 attctagggtgagggttcaattaagtccctcacc 54308491  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 397
Target Start/End: Original strand, 17353802 - 17353846
Alignment:
Q  353 ggtgaattctagggtgagggttcagttaagtccctcacccatgga 397  Q
    |||||||||||| ||||||||||| ||||||||| |||| |||||    
T  17353802 ggtgaattctagtgtgagggttcaattaagtcccacaccgatgga 17353846  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 29516595 - 29516559
Alignment:
Q  355 tgaattctagggtgagggttcagttaagtccctcacc 391  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  29516595 tgaattctacggtgagggttcaattaagtccctcacc 29516559  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 403
Target Start/End: Original strand, 51920720 - 51920764
Alignment:
Q  359 ttctagggtgagggttcagttaagtccctcacccatggatcactt 403  Q
    ||||||||||||||| || |||||||||||||| ||||| |||||    
T  51920720 ttctagggtgagggtccaattaagtccctcaccgatggaccactt 51920764  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 53346546 - 53346506
Alignment:
Q  351 aaggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    |||||||||||||  ||||||||||| ||||||||||||||    
T  53346546 aaggtgaattctacagtgagggttcaattaagtccctcacc 53346506  T

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Target: scaffold0627 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 397
Target Start/End: Original strand, 6470 - 6508
Alignment:
Q  359 ttctagggtgagggttcagttaagtccctcacccatgga 397  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  6470 ttctagggtgagggttcaattaagtccctcaccgatgga 6508  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 352150 - 352200
Alignment:
Q  303 ttataatttactttaaagttataa-attattttaaatacattttaaaagaa 352  Q
    |||||||||| ||||||||| ||| |||||||||||||| |||||||||||    
T  352150 ttataatttattttaaagttgtaatattattttaaataccttttaaaagaa 352200  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 2138475 - 2138515
Alignment:
Q  351 aaggtgaattctagggtgagggttcagttaagtccctcacc 391  Q
    ||||||||||||||||||||||| || ||| ||||||||||    
T  2138475 aaggtgaattctagggtgagggtccaattaggtccctcacc 2138515  T

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