View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_low_18 (Length: 426)
Name: NF3906_low_18
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 50408712 - 50408315
Alignment:
| Q |
1 |
gtgattttttattctttttacaagtaatcatcattgttaatttactttaaacaagtaactaacaatttgctatatggtgccaaaccaagcacgtagctga |
100 |
Q |
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| T |
50408712 |
gtgattttttattctttttacaagtaatcatcattgttaatttactttaaacaagtaactaacaatttgctatatggtgccaaaccaagcacgtagctga |
50408613 |
T |
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| Q |
101 |
gacagcaaaatgttgcacgcaagaaaatgccaaagttgaatacacaaaattcattcatgtatagccaaaattagatattataattgattccctatattta |
200 |
Q |
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| T |
50408612 |
gacagcaaaatgttggacacaagaaaatgccaaagttgaatacacaaaattcattcatgtatagccaaaattagatattataattgattccctatattta |
50408513 |
T |
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| Q |
201 |
tcacatgattacagtgaaagatgggtattgaaaaagaaagcggtcctatactatagacacaaaaatggattgaa-ttgtttttcggttcctagtcattgt |
299 |
Q |
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| T |
50408512 |
tcacatgagtacagtgaaagatgggtattgaaaaagaaagcggtcctatactatagacacaaaaatggattgaatttttttttcggttcctagtcattgt |
50408413 |
T |
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| Q |
300 |
cgtcctagtggtagtgaaatttgcttataaatcaacattgaaacaccaat----------caacattcaacattcaacccctatacatcaatgaatca |
387 |
Q |
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| T |
50408412 |
cgtcctagtggtagtgaaatttgcttataaatcaacattcaaacaccaatcaacattcaacaacattcaacattcaacccctatacatcaatgaatca |
50408315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 397 - 426
Target Start/End: Complemental strand, 50408289 - 50408260
Alignment:
| Q |
397 |
ttcctttcctctcttgccgtcattttggac |
426 |
Q |
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| T |
50408289 |
ttcctttcctctcttgccgtcattttggac |
50408260 |
T |
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