View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3906_low_19 (Length: 426)

Name: NF3906_low_19
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3906_low_19
NF3906_low_19
[»] chr3 (3 HSPs)
chr3 (165-409)||(202448-202700)
chr3 (249-409)||(206491-206652)
chr3 (12-130)||(202735-202858)
[»] chr4 (4 HSPs)
chr4 (165-409)||(6908287-6908538)
chr4 (216-409)||(44924311-44924512)
chr4 (249-400)||(6901694-6901846)
chr4 (12-108)||(6908120-6908216)
[»] chr1 (4 HSPs)
chr1 (253-409)||(29514646-29514802)
chr1 (246-338)||(43632255-43632342)
chr1 (342-398)||(43626361-43626417)
chr1 (246-292)||(43997857-43997903)
[»] chr7 (1 HSPs)
chr7 (338-409)||(24652964-24653035)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 165 - 409
Target Start/End: Complemental strand, 202700 - 202448
Alignment:
Q  165 ctcttacacacataatcaaactaatattcaaaatcaactatgcttcaatcaatgaggcatagttggatcaaagtttcggttgg--------gtataccat 256  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||        |||||||||    
T  202700 ctcttacacacagaatcaaactaatattcaaaatcaactatgcttcaatcaatgaagcatagttggatcaaagtttcggttggatacacgggtataccat 202601  T
Q  257 caaaataagcaatatcaaacagctaaataatattctcttacacacagcatcaagtaaaaggatcaattatcacaaagatcatcaaatgtattggagcaaa 356  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  202600 caaaacaagcaatatcaaacagctaaataatattctcttacacagagcatcaagtaaaaggttcaatcatcacaaagatcatcaaatgtattggagcaaa 202501  T
Q  357 acttaatacttagaaaagaaaagatcaaaaacaacatgtctcgagcaaagatt 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  202500 acttaatacttagaaaagaaaagatcaaaaacaacatgtctcgagcaaagatt 202448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 249 - 409
Target Start/End: Original strand, 206491 - 206652
Alignment:
Q  249 tataccatcaaaataagcaatatcaaacagctaaataatattctcttacacacagcatcaagtaaaaggatcaattatcacaaagatca-tcaaatgtat 347  Q
    ||||||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||| | ||||||||    
T  206491 tataccatcaaaacatgcaatatcaaactgctaaataatattctcttacacacaccatcaagtaaaaggttcaattataacaaagatcatttaaatgtat 206590  T
Q  348 tggagcaaaacttaatacttagaaaagaaaagatcaaaaacaacatgtctcgagcaaagatt 409  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  206591 tggagcaaaacttaatacttggaaaagaaaagatcaaaaacaacatgtctcaagcaaagatt 206652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 202858 - 202735
Alignment:
Q  12 atgaaaatgataaagtctccattaatccaaaacacaggctcaatcaatgaaagattcaaaatcaaattttacaacatcagaatttagaatcaaacat--- 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||       
T  202858 atgaaaatgataaagtctccattaatccaaaacacaggctcaatcaatgaaagattcaaaatcaaattttacaactttagaatttagaatcaaacatatt 202759  T
Q  109 --tttccttaatttagaatcaaaa 130  Q
       |||||||||||||||||||||    
T  202758 tccttccttaatttagaatcaaaa 202735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 165 - 409
Target Start/End: Original strand, 6908287 - 6908538
Alignment:
Q  165 ctcttacacacataatcaaactaatattcaaaatcaactatgcttcaatcaatgaggcatagttggatcaaagtttcggttgg--------gtataccat 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||        |||||||||    
T  6908287 ctcttacacacataatcaaactaatattcaaaatcaactatgcttcaatcaatgaagcatagttggatcaaagtttcggttggatacacgggtataccat 6908386  T
Q  257 caaaataagcaatatcaaacagctaaataatattctcttacacacagcatcaagtaaaaggatcaattatcacaaagatcatcaaatgtattggagcaaa 356  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  6908387 aaaaacaagcaatatcaaacagctaaataatattctcttacacacagcatcaagtaaaaagttcaattatcacaaagatcatcaaatgtattggagcaaa 6908486  T
Q  357 acttaatacttagaaaagaaaagatcaaaaacaacatgtctcgagcaaagatt 409  Q
    || |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6908487 ac-taatacttagaaaagaaaagatcaaaaacaacatgtcttgagcaaagatt 6908538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 216 - 409
Target Start/End: Original strand, 44924311 - 44924512
Alignment:
Q  216 atgaggcatagttggatcaaagtttcggttgg--------gtataccatcaaaataagcaatatcaaacagctaaataatattctcttacacacagcatc 307  Q
    |||| |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44924311 atgaagcatagttggatcaaagtttcggttggatacacaggtataccatcaaaataagcaatatcaaacagctaaataatattctcttacacgcagcatc 44924410  T
Q  308 aagtaaaaggatcaattatcacaaagatcatcaaatgtattggagcaaaacttaatacttagaaaagaaaagatcaaaaacaacatgtctcgagcaaaga 407  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  44924411 aagtaaaaggttcaattatcacaaagatcatcaaatgtattggagcaaaacttaatacttagaaaagaaaggataaaaaacaacatgtctcgagcaaaga 44924510  T
Q  408 tt 409  Q
    ||    
T  44924511 tt 44924512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 249 - 400
Target Start/End: Complemental strand, 6901846 - 6901694
Alignment:
Q  249 tataccatcaaaataagcaatatcaaacagctaaataatattctcttacacacagcatcaagtaaaaggatcaattatcacaaagatcat-caaatgtat 347  Q
    ||||||||||||| | |||||||||||| ||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||| || |||||||||    
T  6901846 tataccatcaaaacatgcaatatcaaactgctaaataatattctcttacacacaccatcaggtaaaaggttcaattataacaaagataattcaaatgtat 6901747  T
Q  348 tggagcaaaacttaatacttagaaaagaaaagatcaaaaacaacatgtctcga 400  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6901746 tggagcaaaacttaatacttggaaaagaaaagatcaaaaacaacatgtctcga 6901694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 6908120 - 6908216
Alignment:
Q  12 atgaaaatgataaagtctccattaatccaaaacacaggctcaatcaatgaaagattcaaaatcaaattttacaacatcagaatttagaatcaaacat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6908120 atgaaaatgataaagtctccattaatccaaaacacaggctcaatcaatgaaagattcaaaatcaaattttacaacattagaatttagaatcaaacat 6908216  T

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Target: chr1 (Bit Score: 89; Significance: 9e-43; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 253 - 409
Target Start/End: Complemental strand, 29514802 - 29514646
Alignment:
Q  253 ccatcaaaataagcaatatcaaacagctaaataatattctcttacacacagcatcaagtaaaaggatcaattatcacaaagatcatcaaatgtattggag 352  Q
    ||||||||||| |||| ||||||| |||||||||||| ||| |||| ||  ||| |||||||||| |||||||||| |||||||||||||||||||||||    
T  29514802 ccatcaaaatatgcaaaatcaaactgctaaataatatactcatacaaactccattaagtaaaaggttcaattatcataaagatcatcaaatgtattggag 29514703  T
Q  353 caaaacttaatacttagaaaagaaaagatcaaaaacaacatgtctcgagcaaagatt 409  Q
    |||||||  |||||| ||||||||||| ||||||| ||||| |||||||||||||||    
T  29514702 caaaactctatacttggaaaagaaaagctcaaaaagaacatctctcgagcaaagatt 29514646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 338
Target Start/End: Complemental strand, 43632342 - 43632255
Alignment:
Q  246 gggtataccatcaaaataagcaatatcaaacagctaaataatattctcttacacacagcatcaagtaaaaggatcaattatcacaaagatcat 338  Q
    |||||||||||||||||| |||| ||||||| ||||| || |     |||||| ||| |||||||||||||| ||||||||||||||||||||    
T  43632342 gggtataccatcaaaatatgcaaaatcaaactgctaactatt-----cttacatacaacatcaagtaaaaggttcaattatcacaaagatcat 43632255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 398
Target Start/End: Complemental strand, 43626417 - 43626361
Alignment:
Q  342 atgtattggagcaaaacttaatacttagaaaagaaaagatcaaaaacaacatgtctc 398  Q
    ||||||||||||||||||||||| || |||||||| |||| |||||||||| |||||    
T  43626417 atgtattggagcaaaacttaatatttggaaaagaagagataaaaaacaacacgtctc 43626361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 43997857 - 43997903
Alignment:
Q  246 gggtataccatcaaaataagcaatatcaaacagctaaataatattct 292  Q
    |||||||||||||||||| |||| ||||||| |||||||||||||||    
T  43997857 gggtataccatcaaaatatgcaaaatcaaactgctaaataatattct 43997903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 338 - 409
Target Start/End: Complemental strand, 24653035 - 24652964
Alignment:
Q  338 tcaaatgtattggagcaaaacttaatacttagaaaagaaaagatcaaaaacaacatgtctcgagcaaagatt 409  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||    
T  24653035 tcaaatgtattggagcaaaacttaatacttggaaaagaaaagatcaaaaacaacatgttttgagcaaagatt 24652964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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