View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_low_20 (Length: 426)
Name: NF3906_low_20
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 31944528 - 31944921
Alignment:
| Q |
19 |
ttatctcttatgggaaacaacaggttcaaattttcagatatgataccaaatgcttggttttacaagctaaaagatatgagcaaatcatcaaggaagagaa |
118 |
Q |
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| T |
31944528 |
ttatctcttatgggaaacaacaggttcaaattttcagatatgataccaaatgcttggttttacaagctaaaagatatgagcaaatcatcaaggaagagaa |
31944627 |
T |
|
| Q |
119 |
atggttctcatcatgttatgaagaacaaagttatatcttcaccaacaacatctcaaaggtctcattcaagctattcacattatttctcaaatgaaccaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31944628 |
atggttctcatcatgttatgaagaacaaagttatatcttcaccaacaacatctcaaaggtctcattcaagctattcacattatttctcaaatgaaccaaa |
31944727 |
T |
|
| Q |
219 |
aaggaatggtaagttattcaacacaccaattcagaccaaagatttgaattttccatttaatgattcaccaagaaggtcttcaaagagaagggctaaaaga |
318 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31944728 |
aaggaatggtaagttattcaacacaccaagtcagaccaaagatttgaattttccatttaatgattcaccaagaaggtcttcaaagagaagggctaaaaga |
31944827 |
T |
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| Q |
319 |
aaaaccatttacaagccttctcaaccatttgatcaagttcaatcacaagaacatgatttgtcttcaattgaaaattcttcttctgagtcttatc |
412 |
Q |
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| T |
31944828 |
aaaaccatttacaagccttctcaaccatttgatcaagttcaatcacaagaacatgatttgtcttcaattgaaaattcttcttctgagtcttatc |
31944921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 27065173 - 27065231
Alignment:
| Q |
28 |
atgggaaacaacaggttcaaattttcagatatgataccaaatgcttggttttacaagct |
86 |
Q |
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| T |
27065173 |
atgggaaattacaagttcaaattatcagatatgatgcctaatgcttggttttacaagct |
27065231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 9949893 - 9949853
Alignment:
| Q |
52 |
tcagatatgataccaaatgcttggttttacaagctaaaaga |
92 |
Q |
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| T |
9949893 |
tcagatatgattcccaatgcttggttttacaagctaaaaga |
9949853 |
T |
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