View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_low_22 (Length: 391)
Name: NF3906_low_22
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 17654494 - 17654124
Alignment:
| Q |
1 |
cattgtggtgatggtgatggttttgttttgagttggcaaaattcgatcaatatcttccttcttctttagagggggtagtgtacctccaaacaatttgaag |
100 |
Q |
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| T |
17654494 |
cattgtggtgatggtgatggttttgttttgagttggcaaaattcgatcaatatcttccttcttctttagagggggtagtgtacctccaaacaatttgaag |
17654395 |
T |
|
| Q |
101 |
attaaataagaatgagctgaatatgcgagatttttagggtataaaagtgtgcacatgaaatgagaccatgtgtaagcctttatatggaaggctttattct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17654394 |
attaaataagaatgagctgaatatgcgagatttttagggtataaaagtgtgcacatgaaatgagaccatgtgtaagcctttatatggaaggctttattct |
17654295 |
T |
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| Q |
201 |
gacaatcgtcctcgaaggatgtctgtgtgtagatacggataagtaaaccttgagtctggtatggtcatccatatatcttatcgaaccctaattttgtgaa |
300 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
17654294 |
gacaatcgtcctcgaaggacgtctgtgtgtagatacggataagtaaaccttgagtctggtatggtcatccatatagcttatccaaccctaattttgtgaa |
17654195 |
T |
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| Q |
301 |
tttagggaaagtccatgtcataatcagcgtgagtggtatttacttaaggcaactcagtctgttgaagaaat |
371 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17654194 |
tttagggaaagtccatgtcataatcagcgtgagtgctatttacttaaggcaactcagtctgttgaagaaat |
17654124 |
T |
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