View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_low_23 (Length: 386)
Name: NF3906_low_23
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 11 - 368
Target Start/End: Complemental strand, 19130937 - 19130580
Alignment:
| Q |
11 |
cacagattcacgttcatagtccatatccgtatcttaagaatttaatatatgtaacaagcattctaacaactttgatatgttcatactacatgtttcctaa |
110 |
Q |
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| T |
19130937 |
cacagattcacgttcatagtccatatccgtatcttaagaatttaatatatgtaacaagcattctaacaactttgatatgttcatactacatgtttcctaa |
19130838 |
T |
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| Q |
111 |
caaaatattttaatataatgtagaaagtatttgtgtcactgtgcttattagaatttagaagcatccaatgacnnnnnnnntagtagctagtataaatatt |
210 |
Q |
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| T |
19130837 |
caaaatattttaatataatgtaggaagtatttgtgtcactgtgcttattagaatttagaagcatccaatgacaaaaaaaatagtagctagtataaatatt |
19130738 |
T |
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| Q |
211 |
gtttgttcatataattttgacttatttgcagcatgttgaagttcccataccaagtcctagtaaagatgaagttttgataaaactggaagcagctagtata |
310 |
Q |
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| T |
19130737 |
gtttgttcatataattttgacttatttgcagcatgttgaagttcccataccaagtcctagtaaagatgaagttttgataaaactggaagcagctagtata |
19130638 |
T |
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| Q |
311 |
aatccatttgattggaaagtacagaaacgcatgttgtggccatttttgcctcccaagt |
368 |
Q |
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| T |
19130637 |
aatccatttgattggaaagtacagaaacgcatgttgtggccatttttgcctcccaagt |
19130580 |
T |
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