View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_low_29 (Length: 341)
Name: NF3906_low_29
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 45102246 - 45101937
Alignment:
| Q |
18 |
aatacggatcctaaggaaaatgcgtcatgataatccaaagttcggttgagagtaatcaaagccttatcgatcaagg--------cagtcaaggttcaaac |
109 |
Q |
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| T |
45102246 |
aatacggatcctaagaaaaatgcatcatgataatccaaagttcggtcgagagtaatcaaagccttatcgatcaagggttcaaggcagtcaaggttcaaac |
45102147 |
T |
|
| Q |
110 |
ttagtggcttttatggtggagaagtgtcacatatggtttaaggttgaccaatgcttaaaaattgtttgaaactttaacaacaattggtttcactcctcgt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45102146 |
ttagtggcttttatggtggagaagtgtcacatatggtttaaggttgaccaatgcttaaaaattgtttgaaactttaacaacaattgatttcactcctcgt |
45102047 |
T |
|
| Q |
210 |
aagtagaagtggtattacttatcataacgattgagacggtgactcaataattgccgattcgattaaaaacaaggaaaataaatattagtgccttaaaact |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45102046 |
aagtagaagtggtattacttatcataacgattgagacggtgactcaataattgccgattcgattaaaaacaaggaaaataaatattagtgccttaaaact |
45101947 |
T |
|
| Q |
310 |
caacttaaat |
319 |
Q |
| |
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|||||||||| |
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| T |
45101946 |
caacttaaat |
45101937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 316
Target Start/End: Original strand, 5942329 - 5942371
Alignment:
| Q |
274 |
aaaaacaaggaaaataaatattagtgccttaaaactcaactta |
316 |
Q |
| |
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| T |
5942329 |
aaaaacaagaaaaataaatattagtgtcttgaaactcaactta |
5942371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 7693635 - 7693682
Alignment:
| Q |
265 |
gattcgattaaaaacaaggaaaataaatattagtgccttaaaactcaa |
312 |
Q |
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| T |
7693635 |
gattcgacaaaaaacaaggaaaacaaatattagtgtcttaaaactcaa |
7693682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 316
Target Start/End: Complemental strand, 37016868 - 37016826
Alignment:
| Q |
274 |
aaaaacaaggaaaataaatattagtgccttaaaactcaactta |
316 |
Q |
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||||||||||||||| ||||||| ||||| ||||||||||||| |
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| T |
37016868 |
aaaaacaaggaaaatgaatattaatgcctcaaaactcaactta |
37016826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 4360620 - 4360660
Alignment:
| Q |
274 |
aaaaacaaggaaaataaatattagtgccttaaaactcaact |
314 |
Q |
| |
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||||||||| |||||||||||||| |||| ||||||||||| |
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| T |
4360620 |
aaaaacaagaaaaataaatattagcgcctcaaaactcaact |
4360660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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