View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_low_3 (Length: 700)
Name: NF3906_low_3
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 176 - 692
Target Start/End: Complemental strand, 4933869 - 4933352
Alignment:
| Q |
176 |
tgattttagcagatcaaaatttgaaggcaaatgcaacgtgatttaaattgtgtatattttcaaaatatctgcaagttgtaaaagatatataaaaattaga |
275 |
Q |
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| T |
4933869 |
tgattttagcacatcaaaatttgaaggcaaatgcaatgtcatttaaattgtgcatattttcaaaatatctgcaagttgtaaaagataaataaaaattaga |
4933770 |
T |
|
| Q |
276 |
gagatcaagaaaaacagttgtccatactatgtatcaattgtcataattgttaaaaa-tgacacttattttaaaacagaaaatatcatacctcagctatga |
374 |
Q |
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| T |
4933769 |
gagatcaagaaaaacagttgtccatactatgtatcaattgtcataattgttaaaaaatgacacttattttaaaacagaaaatatcatacctcagctatga |
4933670 |
T |
|
| Q |
375 |
tggttatgtcaagttttgtggttccaaatagcaatgcactactactagtgactgatagatgaagattctctatctcttggattatgttcatcaatgcacc |
474 |
Q |
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| T |
4933669 |
tggttatgtcaagttttgtggttccaaatagcaatgcactactactagtgactgatagatgaagattctctatctcttggattatgttcatcaatgcacc |
4933570 |
T |
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| Q |
475 |
cttatgtttctcacaatggacacgaatcagcacgtttttctctgacactcttgcctcaacttcaggcagtgacctacttggttttgaggtttgagtgtga |
574 |
Q |
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| T |
4933569 |
cttatgtttctcacaatggacacgaatcagcacgtttttctctgacactcttgcctcaacttcaggcagtgacctacttggttttgaggtgtgagtgtga |
4933470 |
T |
|
| Q |
575 |
caacaattaccatagccagaatttgatgaggtgtctgaaacatcttcatctgaagaatatgactttgtcttctcaacatataccatagacacagattcta |
674 |
Q |
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| T |
4933469 |
caacaattaccatagccagaatttgatgaggtttctgaaacatcttcatctgaagaatatgactttgtcttctcaacatataccatagacacagattcta |
4933370 |
T |
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| Q |
675 |
cgttattcctttgcttct |
692 |
Q |
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| T |
4933369 |
cgttattcttttggttct |
4933352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 4934058 - 4933909
Alignment:
| Q |
14 |
ttaaatgtaatgcatgctgagtttctcagttaagtggtattttgctgaaacatcaaaggatatctgacccagtggtccagaggcactatttaacatttcc |
113 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| | | |||| ||||||||||||||||||||||||| |
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| T |
4934058 |
ttaaatttaatgcatgcttagtttctcagttaagtggtattttgctgaaatatcaaaggatatcttaactagtgttccagaggcactatttaacatttcc |
4933959 |
T |
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| Q |
114 |
ctta--ttttaataagcacgtcaatatagtggattcaattcaatcacctt |
161 |
Q |
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| T |
4933958 |
cttattttttaataagctcgtcaatatagtggattcaattcaatcacctt |
4933909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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