View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3906_low_30 (Length: 340)

Name: NF3906_low_30
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3906_low_30
NF3906_low_30
[»] chr1 (8 HSPs)
chr1 (1-334)||(28495899-28496232)
chr1 (207-326)||(36989348-36989467)
chr1 (208-326)||(12804511-12804629)
chr1 (208-334)||(42287117-42287243)
chr1 (208-334)||(4160377-4160503)
chr1 (208-323)||(12774948-12775063)
chr1 (206-284)||(31644056-31644134)
chr1 (208-334)||(50788819-50788945)
[»] chr8 (2 HSPs)
chr8 (208-334)||(5788723-5788849)
chr8 (268-326)||(33186743-33186801)
[»] chr7 (2 HSPs)
chr7 (208-332)||(40749392-40749516)
chr7 (226-334)||(44150818-44150926)
[»] chr2 (3 HSPs)
chr2 (205-334)||(42898298-42898427)
chr2 (206-334)||(40040789-40040917)
chr2 (208-334)||(38895857-38895983)
[»] chr4 (2 HSPs)
chr4 (206-334)||(22085504-22085632)
chr4 (208-281)||(30518148-30518221)


Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 28495899 - 28496232
Alignment:
Q  1 tcttaagttaaaacttaaaattaaaccagacacataaaaatataatccattaaagaaagcattaaattcaaaacctaacactacatacatgattggaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28495899 tcttaagttaaaacttaaaattaaaccagacacataaaaatataatccattaaagaaagcattaaattcaaaacctaacactacatacatgattggaaaa 28495998  T
Q  101 acctcgtacatgtcacaaatatgaatatgaataaattatagaagcatttattgatttatcacagaaacaaaagattggtgaataaaaggagagtatatta 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28495999 acctcgtacatgtcacaaatatgaatatgaataaattaaagaagcatttattgatttatcacagaaacaaaagattggtgaataaaaggagagtatatta 28496098  T
Q  201 aatattataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatatttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496099 aatattataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatatttt 28496198  T
Q  301 ttggaacatttttcacatttccacttcatctcac 334  Q
    ||||||||||||||||||||||||||| ||||||    
T  28496199 ttggaacatttttcacatttccacttcttctcac 28496232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 207 - 326
Target Start/End: Complemental strand, 36989467 - 36989348
Alignment:
Q  207 ataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaa 306  Q
    |||||| || |||| ||| |||||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||| || |||||||| || |||    
T  36989467 atacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaa 36989368  T
Q  307 catttttcacatttccactt 326  Q
    || || ||||||||||||||    
T  36989367 cacttatcacatttccactt 36989348  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 208 - 326
Target Start/End: Original strand, 12804511 - 12804629
Alignment:
Q  208 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 307  Q
    |||||||||||||| ||||||||||||||| | || || || |||||||| || || | ||||||||||||||||||||| || |||||||| || ||||    
T  12804511 taccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 12804610  T
Q  308 atttttcacatttccactt 326  Q
    | |||||||||||||||||    
T  12804611 acttttcacatttccactt 12804629  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 208 - 334
Target Start/End: Complemental strand, 42287243 - 42287117
Alignment:
Q  208 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 307  Q
    ||||| ||||||||||||||||| |||||| | |||||||| |||||||| || || | ||| |||||||| |||||||| || |||||||| || || |    
T  42287243 tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatatttctttgagc 42287144  T
Q  308 atttttcacatttccacttcatctcac 334  Q
    |||||||||||||||||||| ||||||    
T  42287143 atttttcacatttccacttcttctcac 42287117  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 208 - 334
Target Start/End: Complemental strand, 4160503 - 4160377
Alignment:
Q  208 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 307  Q
    ||||||||||||||||| ||||||||||| || || ||| | || |||||  |||| | ||||||||||||||| || || |||||||||  ||| ||||    
T  4160503 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 4160404  T
Q  308 atttttcacatttccacttcatctcac 334  Q
    |||| ||||| ||||||||| ||||||    
T  4160403 atttctcacacttccacttcttctcac 4160377  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 208 - 323
Target Start/End: Complemental strand, 12775063 - 12774948
Alignment:
Q  208 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 307  Q
    ||||| |||||||| ||||||||||||||| | || ||  | |||||||| ||||| | ||||||||||||||||||||| || ||||| || || ||||    
T  12775063 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaac 12774964  T
Q  308 atttttcacatttcca 323  Q
    | |||||||| |||||    
T  12774963 acttttcacacttcca 12774948  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 284
Target Start/End: Original strand, 31644056 - 31644134
Alignment:
Q  206 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcaga 284  Q
    ||||||| || || ||||| ||||| |||||||| |||||||  |||||||| ||||| |  |||||||||||||||||    
T  31644056 tatacctggaaaaaagggtaccacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcaga 31644134  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 334
Target Start/End: Original strand, 50788819 - 50788945
Alignment:
Q  208 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 307  Q
    ||||| |||||||| ||||||||||||||  | |||||||| || ||||| || || | ||| || |||||||||||||| || ||||| || || || |    
T  50788819 tacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagagc 50788918  T
Q  308 atttttcacatttccacttcatctcac 334  Q
    | || ||||| ||||| ||| ||||||    
T  50788919 acttatcacacttccatttcttctcac 50788945  T

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Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 208 - 334
Target Start/End: Original strand, 5788723 - 5788849
Alignment:
Q  208 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 307  Q
    ||||||||||||||||| |||||||||||| | |||||||| || ||||| ||||| | ||||||||||||||||||||| || |||||||| || ||||    
T  5788723 taccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaac 5788822  T
Q  308 atttttcacatttccacttcatctcac 334  Q
    | |||||||||||||||||| ||||||    
T  5788823 acttttcacatttccacttcttctcac 5788849  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 326
Target Start/End: Complemental strand, 33186801 - 33186743
Alignment:
Q  268 tgagctttccaatcagattggactgcatattttttggaacatttttcacatttccactt 326  Q
    |||||||||||||||||||| || |||||||| || |||||||| ||||||||||||||    
T  33186801 tgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttccactt 33186743  T

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Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 208 - 332
Target Start/End: Complemental strand, 40749516 - 40749392
Alignment:
Q  208 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 307  Q
    |||||||||||||| || ||||| ||||| || |||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||    
T  40749516 taccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaac 40749417  T
Q  308 atttttcacatttccacttcatctc 332  Q
    | || ||||| ||||| ||| ||||    
T  40749416 acttatcacacttccatttcttctc 40749392  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 334
Target Start/End: Original strand, 44150818 - 44150926
Alignment:
Q  226 ccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaacatttttcacatttccact 325  Q
    ||||| |||||||||||||| || |||||||| |||||    ||||| |||||||| ||||| || |||||| |||| || || || ||||||||||| |    
T  44150818 ccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagcacttgtcacatttccatt 44150917  T
Q  326 tcatctcac 334  Q
    || ||||||    
T  44150918 tcttctcac 44150926  T

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Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 205 - 334
Target Start/End: Complemental strand, 42898427 - 42898298
Alignment:
Q  205 ttataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgg 304  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||| |  ||||||||||| || ||||| |||||||| || || |    
T  42898427 ttataccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttag 42898328  T
Q  305 aacatttttcacatttccacttcatctcac 334  Q
    | || || ||||||||||||||| ||||||    
T  42898327 agcacttgtcacatttccacttcttctcac 42898298  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 334
Target Start/End: Complemental strand, 40040917 - 40040789
Alignment:
Q  206 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgga 305  Q
    ||||||| ||||| || |||||||| |||||| |||| ||| | || |||||  | ||  ||||||| |||||||||||||| ||||||||||| || ||    
T  40040917 tatacctggagaatagtgtgccacaatcacatctgtactctttagtgccacaaatcttactatgagccttccaatcagattgaactgcatatttcttaga 40040818  T
Q  306 acatttttcacatttccacttcatctcac 334  Q
    ||| || ||||| ||||||||| ||||||    
T  40040817 acacttatcacacttccacttcttctcac 40040789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 334
Target Start/End: Original strand, 38895857 - 38895983
Alignment:
Q  208 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 307  Q
    |||||||| ||||  |||||||| ||||||||||||||||| |||||||| || ||||  || ||||||||||| ||||| || |||||   ||| || |    
T  38895857 taccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagc 38895956  T
Q  308 atttttcacatttccacttcatctcac 334  Q
    | || ||||| ||||||||| ||||||    
T  38895957 acttctcacacttccacttcttctcac 38895983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 206 - 334
Target Start/End: Original strand, 22085504 - 22085632
Alignment:
Q  206 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgga 305  Q
    ||||||| ||||| |  |||||||| ||||||||||| ||||| || |||||  | ||  |||||||||||||||||||||| ||||||||||| |||||    
T  22085504 tatacctggagaaaattgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttgga 22085603  T
Q  306 acatttttcacatttccacttcatctcac 334  Q
    ||| |||||||| ||||||||| ||||||    
T  22085604 acacttttcacacttccacttcttctcac 22085632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 30518148 - 30518221
Alignment:
Q  208 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatc 281  Q
    |||||||| ||||  || ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||    
T  30518148 taccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatc 30518221  T

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