View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_low_31 (Length: 337)
Name: NF3906_low_31
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 53005341 - 53005654
Alignment:
| Q |
17 |
attttctggcaacaatatgttgtcgttaagcaacattaatccaatgtatccggcgcaccagcaacaaattaacaatccatgattcgattaccttattatt |
116 |
Q |
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| T |
53005341 |
attttctggcaacaatatgttgtcgttaagcaacattaatccaatgtatccggcgcaccagcaacaaattaacaatccatgattcgattaccttattatt |
53005440 |
T |
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| Q |
117 |
caattacgatattggttgttatttgtgcagtatgtctgccattgcggcg--------tctgatgttttttatttattcataatgcctattatatgtttgg |
208 |
Q |
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| T |
53005441 |
caattacgatattggttgttatttgtgcagtatgtctgccattgcggcgattttcaatctgatgttttttatttattcataatgcctattatatgtttgg |
53005540 |
T |
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| Q |
209 |
tacttgacattgtacatgattacacagccttattttttatctcattctttattacatacatctacactggtatcactacttcgtatcgttaagtatagct |
308 |
Q |
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| T |
53005541 |
tacttgacattgtacatgattacacaacctta-tttttatctcattgtttat----tacatctacactggtatcactacttcgtatcgttaagtatagct |
53005635 |
T |
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| Q |
309 |
aatttcctaaatctctgtg |
327 |
Q |
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| T |
53005636 |
aatttactaaatctctgtg |
53005654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 21786462 - 21786507
Alignment:
| Q |
17 |
attttctggcaacaatatgttgtcgttaagcaacattaatccaatg |
62 |
Q |
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| T |
21786462 |
attttccggcgacaagatgatgtcgttaagcaacattaatccaatg |
21786507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 26451778 - 26451833
Alignment:
| Q |
28 |
acaatatgttgtcgttaagcaacattaatccaatgtatccggcgcaccagcaacaa |
83 |
Q |
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| T |
26451778 |
acaagatgttgtagttaagcaacattaatccaatgtctccggcgcaccagcgacaa |
26451833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 13861567 - 13861512
Alignment:
| Q |
28 |
acaatatgttgtcgttaagcaacattaatccaatgtatccggcgcaccagcaacaa |
83 |
Q |
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| T |
13861567 |
acaagatgatgtagttaagcaacattaatccaatgtctccggcgcaccagcgacaa |
13861512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 52526863 - 52526808
Alignment:
| Q |
28 |
acaatatgttgtcgttaagcaacattaatccaatgtatccggcgcaccagcaacaa |
83 |
Q |
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|||| ||| ||| ||||||||||||||||||||||| || ||||||||||| |||| |
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| T |
52526863 |
acaagatgatgtagttaagcaacattaatccaatgtctctggcgcaccagcgacaa |
52526808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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