View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_low_34 (Length: 335)
Name: NF3906_low_34
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 325
Target Start/End: Complemental strand, 43224088 - 43223779
Alignment:
| Q |
16 |
aaatatgccaagaaccacgatagagcatcatcatatagaagcaattgatagggatggatcagaataagttaatgttattgttatccaatgtggttgatgg |
115 |
Q |
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| T |
43224088 |
aaatatgccaagaaccacgatagagcatcatcatatagaagcaattgatagggatggttcagaataagttaatgttattgttatccaatgtggttgatgg |
43223989 |
T |
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| Q |
116 |
gttgcagtcttctaaaaggacggcaatttaacaaggtataccacatgggcatgttctgttatctccacgtgtttcagaaaacgagaaccctcgatgtcac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43223988 |
gttgcagtcttctaaaaggacggcaatttaacaaggtataccacatgggcatgttctgttatctccacgtgtttcagaaaacgagaaccctcgatgtcac |
43223889 |
T |
|
| Q |
216 |
tagtttgactttggtctctggaatctgtgttatagtagtactaggagttgtctattcttctccttaattgtcatttttcaaattgagattctcagaagac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43223888 |
tagtttgactttggtctctggaatctgtgttatagtagtactaggagttgtctattcttctccttaattgtcatttttcaaattgagattctcagaagac |
43223789 |
T |
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| Q |
316 |
agtgcctttg |
325 |
Q |
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|||||||||| |
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| T |
43223788 |
agtgcctttg |
43223779 |
T |
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