View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3906_low_35 (Length: 325)
Name: NF3906_low_35
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_35 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 3108446 - 3108701
Alignment:
| Q |
1 |
ctccacctcaatacccgaaacaatttaagaaaaaagtgactctaaatctcattgagtggacctcaatgccattttatcacaataggttaataaataaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3108446 |
ctccacctcaatacccgaaacaatttaagaaaaaagtgactctaaatctcattgagtggacctcaatgccattttatcacaataggttaataaataaata |
3108545 |
T |
|
| Q |
101 |
aataatgataactctaagggtttgtatagactatagtgataacaaaatataatggggtaacatttgggtgacataactctcttaaatagctctctcgtct |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||| | | || |
|
|
| T |
3108546 |
aataatgataactctaaggatttgtatagactatggtgataacaagatataatgggataacatttgggtgacataactctcttaaatagttcttttgact |
3108645 |
T |
|
| Q |
201 |
aaataatatattttaattattcgttcatcattttcttttctaaaatgcattaataa |
256 |
Q |
| |
|
||||||||||||||||| ||| ||| ||||| ||||||||||||||||||||||| |
|
|
| T |
3108646 |
aaataatatattttaatcatttattcgtcattctcttttctaaaatgcattaataa |
3108701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 3108775 - 3108816
Alignment:
| Q |
268 |
gaggaaataaatgtaaatttgtaagtgctttggagtcctaaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3108775 |
gaggaaataaatgtaaatttgtaagtgctttggagtcctaaa |
3108816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 32279353 - 32279307
Alignment:
| Q |
190 |
ctctctcgtctaaataatatattttaattattcgttcatcattttct |
236 |
Q |
| |
|
||||||| | |||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
32279353 |
ctctctcatttaaataatttattttaattattcattcatcattttct |
32279307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 27554981 - 27554936
Alignment:
| Q |
191 |
tctctcgtctaaataatatattttaattattcgttcatcattttct |
236 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
27554981 |
tctctcatctaaataatctattttaattatttattcatcattttct |
27554936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 42467011 - 42466974
Alignment:
| Q |
195 |
tcgtctaaataatatattttaattattcgttcatcatt |
232 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
42467011 |
tcgtctaaataatttattttaattattcattcatcatt |
42466974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 50700046 - 50700103
Alignment:
| Q |
190 |
ctctctcgtctaaataatatattttaattattcgttcatcattttcttttctaaaatg |
247 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||| ||||||||| ||| ||||||||| |
|
|
| T |
50700046 |
ctctctcgtctaaataatttattttaatcatttattcatcattctctcatctaaaatg |
50700103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 53406540 - 53406500
Alignment:
| Q |
198 |
tctaaataatatattttaattattcgttcatcattttcttt |
238 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
53406540 |
tctaaataatttattttaattatttattcatcattttcttt |
53406500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University