View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_low_36 (Length: 320)
Name: NF3906_low_36
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 42444728 - 42444984
Alignment:
| Q |
1 |
aaaaaatttgtgactagctcgactcgaattttgagccgtcataactaactcgagtcgagttgatataaatctatcgagttgagccaagctgaatcaaatt |
100 |
Q |
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|||||| |||||||||||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42444728 |
aaaaaaattgtgactagctcgactcgagtttcaagccgtcgtaactaacttgagtcgagttgatataaatctatcgagttgagccgagctgaatcaaatt |
42444827 |
T |
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| Q |
101 |
agattcagtttgagccgagctcaatactatgtttctgtttatgatagttacataccaagggtataaaatttgaaggaaaaatcgcaggaacaaaaacact |
200 |
Q |
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| T |
42444828 |
agattcagtttgagccgagctcaatactatgtttctgttcatgatagttacataccaagggtataaaatttgaaggaaaaatcgcaggaacaaaaacact |
42444927 |
T |
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| Q |
201 |
aaaacagctcataacaaaagtgtgaaataacgtacctttgattgcaaaagaccaaag |
257 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42444928 |
aaaacagttcataacaaaggtgtgaaataacgtacctttgattgcaaaagaccaaag |
42444984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 304
Target Start/End: Original strand, 42445001 - 42445031
Alignment:
| Q |
274 |
gtgccaatttcttatgttaccctgttttcat |
304 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42445001 |
gtgccaatttcttatgttaccctgttttcat |
42445031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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