View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3906_low_37 (Length: 316)
Name: NF3906_low_37
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_37 |
 | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 21 - 297
Target Start/End: Original strand, 43070634 - 43070911
Alignment:
| Q |
21 |
gaaaagctcccaaaatgacagcagaacccgcgcaagataaaggaattgaacgtaaggaatgttgaataactaaatatacttagcaatcatattttcaatt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43070634 |
gaaaagctcccaaaatgacagcagaacccgcgcaagataaaggaattgaacgtaaggaatgttgaataactaaatatacttcgcaatcatattttcaatt |
43070733 |
T |
|
| Q |
121 |
tataaacacagagcaaagaggaaagcacaatcattaaaaggtcagcatcaatgggcatattggtgtgtttgnnnnnnnntacac--atgattttaaagca |
218 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||| |||||||||||| | |
|
|
| T |
43070734 |
tataaacacagagcgaagtggaaagcacaatcatt-aaaggtcagcatcaatggacatattggtgtgtttgaaaaaaaatacacatatgattttaaagta |
43070832 |
T |
|
| Q |
219 |
tcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa |
297 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43070833 |
tcaatcaatttattaagagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa |
43070911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 21 - 297
Target Start/End: Original strand, 18354559 - 18354836
Alignment:
| Q |
21 |
gaaaagctcccaaaatgacagcagaacccgcgcaagataaaggaattgaacgtaaggaatgttgaataactaaatatacttagcaatcatattttcaatt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18354559 |
gaaaagctcccaaaatgacagcagaacccgcgcaagataaaggaattgaacgtaaggaatgttgaataactaaatatacttcgcaatcatattttcaatt |
18354658 |
T |
|
| Q |
121 |
tataaacacagagcaaagaggaaagcacaatcattaaaaggtcagcatcaatgggcatattggtgtgtttgnnnnnnnntacac--atgattttaaagca |
218 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||| |||||||||||| | |
|
|
| T |
18354659 |
tataaacacagagcgaagtggaaagcacaatcatt-aaaggtcagcatcaatggacatattggtgtgtttgaaaaaaaatacacatatgattttaaagta |
18354757 |
T |
|
| Q |
219 |
tcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa |
297 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18354758 |
tcaatcaatttattaagagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa |
18354836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 28 - 297
Target Start/End: Original strand, 10328285 - 10328554
Alignment:
| Q |
28 |
tcccaaaatgacagcagaacccgcgcaagataaaggaattgaacgtaaggaatgttgaataactaaatatacttagcaatcatattttcaatttataaac |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10328285 |
tcccaaaatgacagcagaacccgcgcaagataaaggaattgaacgtaaggaatgttgaataactaaatatacttcgcaatcatattttcaatttataaac |
10328384 |
T |
|
| Q |
128 |
acagagcaaagaggaaagcacaatcattaaaaggtcagcatcaatgggcatattggtgtgtttg-nnnnnnnntacacatgattttaaagcatcaatcaa |
226 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| ||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
10328385 |
acagagcgaagaggaaagcacaatcatt-aaaggtcaacatcaatggacatattggtgtgtttgaaaaaaaaatacacatgattttaaagtatcaatcaa |
10328483 |
T |
|
| Q |
227 |
tttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa |
297 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10328484 |
tttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa |
10328554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 297
Target Start/End: Complemental strand, 12742558 - 12742280
Alignment:
| Q |
21 |
gaaaagctcccaaaatgacagcagaacccgcgcaagataaaggaattgaacgtaaggaatgttgaataactaaatatacttagcaatcatattttcaatt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12742558 |
gaaaagctcccaaaatgacagcagaacccgcgcaagataaaggaattgaacgtaaggaatgttgaataactaaatatacttcgcaatcatattttcaatt |
12742459 |
T |
|
| Q |
121 |
tataaacacagagcaaagaggaaagcacaatcattaaaaggtcagcatcaatgggcatattggtgtgtttg-nnnnnnnntacac--atgattttaaagc |
217 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||| |||||||||||| |
|
|
| T |
12742458 |
tataaacacagagcgaagtggaaagcacaatcatt-aaaggtcagcatcaatggacatattggtgtgtttgaaaaaaaaatacacatatgattttaaagt |
12742360 |
T |
|
| Q |
218 |
atcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa |
297 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12742359 |
atcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa |
12742280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 21 - 297
Target Start/End: Original strand, 23348232 - 23348509
Alignment:
| Q |
21 |
gaaaagctcccaaaatgacagcagaacccgcgcaagataaaggaattgaacgtaaggaatgttgaataactaaatatacttagcaatcatattttcaatt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
23348232 |
gaaaagctcccaaaatgacagcagaacccgcgcaagataaaggaattgaacgtaaggaatgttgaataactaaatatacttcgcaatcatatttttaatt |
23348331 |
T |
|
| Q |
121 |
tataaacacagagcaaagaggaaagcacaatcattaaaaggtcagcatcaatgggcatattggtgtgttt--gnnnnnnnntacacatgattttaaagca |
218 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| |||||||||||| ||||| ||||||||||||||| |||||||||||||||| | |
|
|
| T |
23348332 |
tataaacacagagcgaagtggaaagcacaatcatt-aaaggtcagcattaatggacatattggtgtgtttaaaaaaaaaaacacacatgattttaaagta |
23348430 |
T |
|
| Q |
219 |
tcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa |
297 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23348431 |
tcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa |
23348509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 297
Target Start/End: Complemental strand, 9044673 - 9044394
Alignment:
| Q |
21 |
gaaaagctcccaaaatgacagcagaacccgcgcaagataaaggaattgaacgtaaggaatgttgaataactaaatatacttagcaatcatattttcaatt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9044673 |
gaaaagctcccaaaatgacagcagaacccgcgcaagataaaggaattgaacgtaaggaatgttgaataactaaatatacttcgcaatcatattttcaatt |
9044574 |
T |
|
| Q |
121 |
tataaacacagagcaaagaggaaagcacaatcattaaaaggtcagcatcaatgggcatattggtgtgtttg--nnnnnnnntacac--atgattttaaag |
216 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||| |||||||||||| |
|
|
| T |
9044573 |
tataaacacagagcgaagtggaaagcacaatcatt-aaaggtcagcatcaatggacatattggtgtgtttgaaaaaaaaaatacacatatgattttaaag |
9044475 |
T |
|
| Q |
217 |
catcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa |
297 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9044474 |
tatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa |
9044394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 297
Target Start/End: Original strand, 30441797 - 30442075
Alignment:
| Q |
21 |
gaaaagctcccaaaatgacagcagaacccgcgcaagataaaggaattgaacgtaaggaatgttgaataactaaatatacttagcaatcatattttcaatt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30441797 |
gaaaagctcccaaaatgacagcagaacccgcacaaaataaaggaattaaacgtaaggaatgttgaataactaaatatacttcgcaatcatattttcaatt |
30441896 |
T |
|
| Q |
121 |
tataaacacagagcaaagaggaaagcacaatcattaaaaggtcagcatcaatgggcatattggtgtgtttg---nnnnnnnntacacatgattttaaagc |
217 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||||||| |
|
|
| T |
30441897 |
tataaacacagagcgaagtggaaagcacaatcatt-aaaggtcagcatcaatggacatattggtgtgtttgaaaaaaaaataaacatatgattttaaagt |
30441995 |
T |
|
| Q |
218 |
atcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30441996 |
atcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa |
30442075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 60 - 297
Target Start/End: Original strand, 7472775 - 7473014
Alignment:
| Q |
60 |
aaggaattgaacgtaaggaatgttgaataactaaatatacttagcaatcatattttcaatttataaacacagagcaaagaggaaagcacaatcattaaaa |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| |
|
|
| T |
7472775 |
aaggaattgaacgtaaggaatgttgaataactaaatatacttcgcaatcatattttcaatttataaacacagagcgaagtggaaagcacaatcatt-aaa |
7472873 |
T |
|
| Q |
160 |
ggtcagcatcaatgggcatattggtgtgtttg-nnnnnnnntacac--atgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaa |
256 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7472874 |
ggtcagcatcaatggacatattggtgtgtttgaaaaaaaaatacacatatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaa |
7472973 |
T |
|
| Q |
257 |
atctatttaaatatcatcaattcacttacaaacaaaccaaa |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7472974 |
atctatttaaatatcatcaattcacttacaaacaaaccaaa |
7473014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 28 - 297
Target Start/End: Original strand, 53972545 - 53972815
Alignment:
| Q |
28 |
tcccaaaatgacagcagaacccgcgcaagataaaggaattgaacgtaaggaatgttgaataactaaatatacttagcaatcatattttcaatttataaac |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
53972545 |
tcccaaaatgacagcagaacccgcgcaagataaatgaattgaacttaaggaatgttgaataactaaatatacttcgcaatcatattttcaatttataaac |
53972644 |
T |
|
| Q |
128 |
acagagcaaagaggaaagcacaatcattaaaaggtcagcatcaatgggcatattggtgtgtttg--nnnnnnnntacacatgattttaaagcatcaatca |
225 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
53972645 |
acagagcgaagaggaaagcacaatcatt-aaaggtcagcatcaatggacatattggtgtgtttgaaaaaaaaaatacacatgattttaaagtatcaatca |
53972743 |
T |
|
| Q |
226 |
atttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa |
297 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53972744 |
atttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa |
53972815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 28 - 297
Target Start/End: Original strand, 19881369 - 19881640
Alignment:
| Q |
28 |
tcccaaaatgacagcagaacccgcgcaagataaaggaattgaacgtaaggaatgttgaataactaaatatacttagcaatcatattttcaatttataaac |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19881369 |
tcccaaaatgacagcagaacccgcgcaagataaaggaattgaacgtaagaaatgttgaataactaaatatacttcgcaatcatattttcaatttataaac |
19881468 |
T |
|
| Q |
128 |
acagagcaaagaggaaagcacaatcattaaaaggtcagcatcaatgggcatattggtgtgtttg---nnnnnnnntacacatgattttaaagcatcaatc |
224 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
19881469 |
acagagcgaagaggaaagcacaatcatt-aaaggtcagcatcaatggacatattggtgtgtttgaaaaaaaaaaaaacacatgattttaaagtatcaatc |
19881567 |
T |
|
| Q |
225 |
aatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa |
297 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19881568 |
aatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa |
19881640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 200 - 297
Target Start/End: Complemental strand, 37983097 - 37983000
Alignment:
| Q |
200 |
tacacatgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa |
297 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37983097 |
tacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa |
37983000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 28 - 297
Target Start/End: Complemental strand, 1515 - 1246
Alignment:
| Q |
28 |
tcccaaaatgacagcagaacccgcgcaagataaaggaattgaacgtaaggaatgttgaataactaaatatacttagcaatcatattttcaatttataaac |
127 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1515 |
tcccaaaatgacagcagaaccatcgcaagataaaggaattgaacttaaggaatgttgaataactaaatatacttcgcaatcatattttcaatttataaac |
1416 |
T |
|
| Q |
128 |
acagagcaaagaggaaagcacaatcattaaaaggtcagcatcaatgggcatattggtgtgtttg-nnnnnnnntacacatgattttaaagcatcaatcaa |
226 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
1415 |
acagagcgaagaggaaagcacaatcatt-aaaggtcagcatcaatggacatattggtgtgtttgaaaaaaaaatacacatgattttaaaatatcaatcaa |
1317 |
T |
|
| Q |
227 |
tttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa |
297 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1316 |
tttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa |
1246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 191
Target Start/End: Original strand, 33688074 - 33688159
Alignment:
| Q |
103 |
gcaatcatattttcaatttataaacacagagcaaagaggaaagcacaatcattaaaaggtcagcatcaatgggcatattggtgtgtttg |
191 |
Q |
| |
|
||||||||||||||||||||||||||| | | |||||||||||||||||||| |||||||| ||||||| | |||||||||||||||| |
|
|
| T |
33688074 |
gcaatcatattttcaatttataaacac--atcgaagaggaaagcacaatcatt-aaaggtcaacatcaatcgacatattggtgtgtttg |
33688159 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 21674756 - 21674846
Alignment:
| Q |
21 |
gaaaagctcccaaaatgacagcagaacccgcgcaagataaaggaattgaacgtaaggaatgttgaataactaaatatacttagcaatcatat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| |||||||||||| ||||| |||| ||||| |||| |
|
|
| T |
21674756 |
gaaaagctcccaaaatgacagcagaacccgcgccagataaaggaatt-agggtaagaaatgttgaataaataaatcaacttggcaataatat |
21674846 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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