View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_low_46 (Length: 254)
Name: NF3906_low_46
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 23867400 - 23867622
Alignment:
| Q |
18 |
ccaatgacttcaattaacggctcttttactggctataccatgtgaaccatcgcaacggtcacatttcagtttctcaaacgctccaaaacttcctatattc |
117 |
Q |
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| T |
23867400 |
ccaatgacttcaattaacggctcttttactggttataccatgtgaaccatcgcaacggtcacatttcagtttctcaaacgctccaaaacttcctatattc |
23867499 |
T |
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| Q |
118 |
tataaattcccaacactaacatttctcagcagacacatttatatttccacaacacaaacacgaccacttacaattctttccaacgttgttattactacaa |
217 |
Q |
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||||||||||||| || ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23867500 |
tataaattcccaataccaacatttctcaacagacacatttatttttccacaacacaaacacgaccacttacaattctttccaacgttgttattgctacaa |
23867599 |
T |
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| Q |
218 |
ttttccgacacactcactaaccc |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
23867600 |
ttttccgacacactcactaaccc |
23867622 |
T |
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