View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_low_49 (Length: 251)
Name: NF3906_low_49
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 9381298 - 9381070
Alignment:
| Q |
18 |
gggacaaaattttcagattttgccatttgggtcgggaagaaggatgtgtcctggagttactttagcaatgcaagaagttccagctttgcttggtgctata |
117 |
Q |
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| T |
9381298 |
gggacaaaattttcagattttgccatttgggtcaggaagaaggatgtgtcctggagttactttagcaatgcaagaagttccagctttgcttggtgctata |
9381199 |
T |
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| Q |
118 |
attcaatgctttgattttaattttgtgggtcctaagggtgagattttgaagggtggtgatattgttattgatgtgaatgaaaggccaggattgactgctc |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9381198 |
attcaatgctttgattttaattttgtgggtcccaagggtgagattttgaagggtcgtgatattgttattgatgtgaatgaaaggccaggattgactgctc |
9381099 |
T |
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| Q |
218 |
ctagggtccatgatttggtctgtgctcct |
246 |
Q |
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| T |
9381098 |
ctagggtccatgatttggtttgtgttcct |
9381070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 22 - 246
Target Start/End: Complemental strand, 9398719 - 9398495
Alignment:
| Q |
22 |
caaaattttcagattttgccatttgggtcgggaagaaggatgtgtcctggagttactttagcaatgcaagaagttccagctttgcttggtgctataattc |
121 |
Q |
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| T |
9398719 |
caaaattttcagattttgccatttgggtcaggaagaaggatgtgtcctggggttactttagcaatgcaagaagttccagctttgcttggtgccataattc |
9398620 |
T |
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| Q |
122 |
aatgctttgattttaattttgtgggtcctaagggtgagattttgaagggtggtgatattgttattgatgtgaatgaaaggccaggattgactgctcctag |
221 |
Q |
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| T |
9398619 |
aatgctttgattttaattttgtgggtcctaagggtgagattttgaagggtggtgatattgttattgatgtgaatgaaaggccaggattgactgctcctag |
9398520 |
T |
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| Q |
222 |
ggtccatgatttggtctgtgctcct |
246 |
Q |
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| T |
9398519 |
ggtgcatgatttggtttgtgttcct |
9398495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 23244665 - 23244784
Alignment:
| Q |
18 |
gggacaaaattttcagattttgccatttgggtcgggaagaaggatgtgtcctggagttactttagcaatgcaagaagttccagctttgcttggtgctata |
117 |
Q |
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||||||| ||||||| || | |||||||| || |||||||| ||||||||||| ||| | ||||| ||||||||||| ||||| ||||||||||| || |
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| T |
23244665 |
gggacaacattttcaacttctaccatttggatctggaagaagaatgtgtcctggtgtttcgttagccatgcaagaagtgccagcattgcttggtgcaatt |
23244764 |
T |
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| Q |
118 |
attcaatgctttgattttaa |
137 |
Q |
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| T |
23244765 |
attcagtgttttgattttaa |
23244784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 34762558 - 34762524
Alignment:
| Q |
40 |
ccatttgggtcgggaagaaggatgtgtcctggagt |
74 |
Q |
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| T |
34762558 |
ccatttgggtctggaagaaggatgtgtcctggagt |
34762524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 34781630 - 34781664
Alignment:
| Q |
40 |
ccatttgggtcgggaagaaggatgtgtcctggagt |
74 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
34781630 |
ccatttgggtctggaagaaggatgtgtcctggagt |
34781664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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