View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_low_50 (Length: 250)
Name: NF3906_low_50
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 4934106 - 4934330
Alignment:
| Q |
8 |
aaaacagatagattgacttgttcattttatttgctgcatttacttagtttgtctatcttacggtacaaatgcagatggatgagaagttcagcctaagcgt |
107 |
Q |
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| T |
4934106 |
aaaacagatagattgacttgttcattttatttgctgcatttacttactttgtctatcttccggtacaaatgcagatggatgagaagttcagcctaagcgt |
4934205 |
T |
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| Q |
108 |
gcaggagctagctagaaaacttcgggttgtacttttgtaatacctaagtgattgaggttacatgattgataaacttcatcaaataacgaattatttgaaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4934206 |
gcaggagctagctagaaaacttcgggttgtacttttgtaatacctaagtgattgaggttacatgattgataaacttcatcaaataacaaattatttgaaa |
4934305 |
T |
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| Q |
208 |
gaatccaattttaatttcaaagtgc |
232 |
Q |
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||||||||||||||||||||||||| |
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| T |
4934306 |
gaatccaattttaatttcaaagtgc |
4934330 |
T |
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