View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_low_52 (Length: 249)
Name: NF3906_low_52
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 3 - 248
Target Start/End: Original strand, 5145769 - 5146014
Alignment:
| Q |
3 |
atattgaagtatttaaaaaaggggcaaaagataggaaaggccacgtggtttgtagtaaagaaagggttattatggcatgtgaaatcctcgtttaagtgtc |
102 |
Q |
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| T |
5145769 |
atattgaagtatttaaaaaaggggcaaaagataggaaaggccacgtggtttgtagtaaagaaagggttattatggcatgtgaaatcctcgtttaagtgtc |
5145868 |
T |
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| Q |
103 |
cccaataccctctacaacatacaataaacttagatattagtcaccgggaccattatatagctagggagtgctattaaaagaaagaaaaagatagctaagg |
202 |
Q |
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| T |
5145869 |
cccaataccctctacaacatacaataaacttagatattagtcaccgggaccattatatagctagggagtgctattaaaagaaagaaaaagatagctaagg |
5145968 |
T |
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| Q |
203 |
agtacaatattatgaccctaacatgatttgaattcatctcactcga |
248 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
5145969 |
agtacaatattatgaccctaacatgatttgaattcatgttactcga |
5146014 |
T |
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