View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3906_low_53 (Length: 248)

Name: NF3906_low_53
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3906_low_53
NF3906_low_53
[»] chr1 (10 HSPs)
chr1 (1-238)||(28496195-28496432)
chr1 (15-111)||(12804614-12804710)
chr1 (17-111)||(36989267-36989361)
chr1 (8-111)||(4160304-4160407)
chr1 (17-228)||(31644163-31644374)
chr1 (15-111)||(12774864-12774960)
chr1 (173-237)||(42286921-42286985)
chr1 (171-238)||(50789075-50789142)
chr1 (15-45)||(42287110-42287140)
chr1 (188-237)||(12774741-12774790)
[»] chr4 (2 HSPs)
chr4 (17-237)||(30518253-30518470)
chr4 (5-126)||(22085599-22085720)
[»] chr2 (4 HSPs)
chr2 (17-225)||(40040602-40040810)
chr2 (17-111)||(42898225-42898319)
chr2 (26-72)||(5435530-5435576)
chr2 (17-66)||(38895962-38896011)
[»] chr3 (1 HSPs)
chr3 (16-113)||(52248459-52248556)
[»] chr7 (1 HSPs)
chr7 (17-238)||(40749193-40749411)
[»] chr8 (4 HSPs)
chr8 (161-238)||(33186538-33186615)
chr8 (8-66)||(33186707-33186765)
chr8 (15-48)||(5788826-5788859)
chr8 (194-238)||(5789002-5789046)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 28496195 - 28496432
Alignment:
Q  1 ttttttggaacatgtttcacatttccacttcttctcaccgtgctttctactaaagtgcttttttatacctgtgaggtcaccaagtgctcttgaagggtca 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496195 ttttttggaacatttttcacatttccacttcttctcaccgtgctttctactaaagtgcttttttatacctgtgaggtcaccaagtgctcttgaagggtca 28496294  T
Q  101 tggtggacacaggtcttctctggacagatgtaaactttcttcttgataacatctttgttggatctctgtctaagcttccatggaaggttgtgtcctcttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496295 tggtggacacaggtcttctctggacagatgtaaactttcttcttgataacatctttgttggatctctgtctaagcttccatggaaggttgtgtcctcttc 28496394  T
Q  201 tatgtagttgaaggttttgatctctttggaaccctttg 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28496395 tatgtagttgaaggttttgatctctttggaaccctttg 28496432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 12804614 - 12804710
Alignment:
Q  15 tttcacatttccacttcttctcaccgtgctttctactaaagtgcttttttatacctgtgaggtcaccaagtgctcttgaagggtcatggtggacaca 111  Q
    |||||||||||||||| |||||||| |||||||||  ||||||||| || || || |||||||||||||| || ||||||||||||||||| |||||    
T  12804614 tttcacatttccactttttctcaccatgctttctagaaaagtgcttcttaattccagtgaggtcaccaagagcccttgaagggtcatggtgaacaca 12804710  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 36989361 - 36989267
Alignment:
Q  17 tcacatttccacttcttctcaccgtgctttctactaaagtgcttttttatacctgtgaggtcaccaagtgctcttgaagggtcatggtggacaca 111  Q
    |||||||||||||| |||||||| |||||||||| |||||||||||| || || || || |||||||||||||||| ||||| |||||| |||||    
T  36989361 tcacatttccactttttctcaccatgctttctacaaaagtgctttttaattccagtaagatcaccaagtgctcttgcagggttatggtgtacaca 36989267  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 4160407 - 4160304
Alignment:
Q  8 gaacatgtttcacatttccacttcttctcaccgtgctttctactaaagtgcttttttatacctgtgaggtcaccaagtgctcttgaagggtcatggtgga 107  Q
    |||||| | ||||| ||||||||||||||||||||||| ||   ||||||||| || || || || |||||||||||||| ||||||||||||||||| |    
T  4160407 gaacatttctcacacttccacttcttctcaccgtgcttcctgaaaaagtgcttcttgattccagttaggtcaccaagtgcccttgaagggtcatggtgaa 4160308  T
Q  108 caca 111  Q
    ||||    
T  4160307 caca 4160304  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 31644163 - 31644374
Alignment:
Q  17 tcacatttccacttcttctcaccgtgctttctactaaagtgcttttttatacctgtgaggtcaccaagtgctcttgaagggtcatggtggacacaggtct 116  Q
    ||||||||||| || |||||||| || ||||||||| | || || || || ||||| || || ||||| || |||||||||| ||| || ||||| |       
T  31644163 tcacatttccattttttctcaccatgttttctactataatgtttcttaattcctgtaagatctccaagagcccttgaagggttatgatgaacacatgaag 31644262  T
Q  117 tctctggacagatgtaaactttcttcttgataacatctttgttggatctctgtctaagcttccatggaaggttgtgtcctcttctatgtagttgaaggtt 216  Q
     ||||||||| |  ||| || |||| || |||||||||||||||   || ||  | | ||||||||| ||||| |||||||| |||||||| || |||||    
T  31644263 gctctggacaaacataagctctctttttaataacatctttgttgttcctttgcttcaacttccatggtaggttatgtcctctcctatgtagctgtaggtt 31644362  T
Q  217 ttgatctctttg 228  Q
    ||||||||||||    
T  31644363 ttgatctctttg 31644374  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 12774960 - 12774864
Alignment:
Q  15 tttcacatttccacttcttctcaccgtgctttctactaaagtgcttttttatacctgtgaggtcaccaagtgctcttgaagggtcatggtggacaca 111  Q
    ||||||| ||||| || |||||||| |||||||||  | |||| || || || || |||||||||||||| || ||||||||||||||||| |||||    
T  12774960 tttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcaccaagagcccttgaagggtcatggtgaacaca 12774864  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 42286985 - 42286921
Alignment:
Q  173 agcttccatggaaggttgtgtcctcttctatgtagttgaaggttttgatctctttggaacccttt 237  Q
    |||||||| ||||| ||||||||||||||||| |||||||| ||||| || ||||| ||||||||    
T  42286985 agcttccaaggaagattgtgtcctcttctatgaagttgaagattttgctccctttgaaacccttt 42286921  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 50789075 - 50789142
Alignment:
Q  171 taagcttccatggaaggttgtgtcctcttctatgtagttgaaggttttgatctctttggaaccctttg 238  Q
    |||||||||| || | ||||||||||||||| || || || || ||||| ||||||||||||||||||    
T  50789075 taagcttccaaggcaagttgtgtcctcttctgtgaagctgtagattttgctctctttggaaccctttg 50789142  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 42287140 - 42287110
Alignment:
Q  15 tttcacatttccacttcttctcaccgtgctt 45  Q
    |||||||||||||||||||||||||||||||    
T  42287140 tttcacatttccacttcttctcaccgtgctt 42287110  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 12774790 - 12774741
Alignment:
Q  188 ttgtgtcctcttctatgtagttgaaggttttgatctctttggaacccttt 237  Q
    ||||||||||||||||||||||| |  ||||| || ||||||||||||||    
T  12774790 ttgtgtcctcttctatgtagttgtaaattttgctccctttggaacccttt 12774741  T

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Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 30518253 - 30518470
Alignment:
Q  17 tcacatttccacttcttctcaccgtgctttctactaaagtgcttttttatacctgtgaggtcaccaagtgctcttgaagggtcatggtggacacaggtct 116  Q
    ||||| ||||||||||| ||||| |||||||||| ||||||||||||||| || || | |||||||||||| |||||||| |||||||||||||| || |    
T  30518253 tcacacttccacttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggatcatggtggacacaagttt 30518352  T
Q  117 tctctggacagatgtaaactttcttcttgataacatctttgttggatctctgtctaagcttccatggaaggttgtgtcctcttctatgtagttgaaggtt 216  Q
    |||||||||| |  |||||| ||||||| ||    |||||||| | ||||||  |||||||||||||||| || ||||| | |||||| |||||||| ||    
T  30518353 tctctggacacacataaactctcttctttat---ttctttgtttgttctctgcttaagcttccatggaagattatgtccacgtctatgcagttgaagatt 30518449  T
Q  217 ttgatctctttggaacccttt 237  Q
    |||||||||||| || |||||    
T  30518450 ttgatctctttgaaaaccttt 30518470  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 22085599 - 22085720
Alignment:
Q  5 ttggaacatgtttcacatttccacttcttctcaccgtgctttctactaaagtgcttttttatacctgtgaggtcaccaagtgctcttgaagggtcatggt 104  Q
    ||||||||  ||||||| ||||||||||||||||| || ||||||||| | || || ||||| ||||| |  || || |  ||||| ||||| |||||||    
T  22085599 ttggaacacttttcacacttccacttcttctcaccatgttttctactataatgtttctttattcctgtcaaatctcccaaagctctagaaggttcatggt 22085698  T
Q  105 ggacacaggtcttctctggaca 126  Q
    | ||||| |||||||| |||||    
T  22085699 gcacacaagtcttctcaggaca 22085720  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 40040810 - 40040602
Alignment:
Q  17 tcacatttccacttcttctcaccgtgctttctactaaagtgcttttttatacctgtgaggtcaccaagtgctcttgaagggtcatggtggacacaggtct 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || || |||||   |||||||||||| || ||| |||    
T  40040810 tcacacttccacttcttctcaccgtgctttctactaaagtgcttttttatccctgtcaggtctcctagagctctactagggtcatggtgcacgcagctct 40040711  T
Q  117 tctctggacagatgtaaactttcttcttgataacatctttgttggatctctgtctaagcttccatggaaggttgtgtcctcttctatgtagttgaaggtt 216  Q
    | |||||||| |  || ||||||||| | || || ||    |||  ||| ||  |||||||||||||||| |||||||||| || |||||| || |||||    
T  40040710 tttctggacaaacatacactttcttccttatcacctccagcttgtttctttgcttaagcttccatggaagattgtgtcctcgtcgatgtagctgtaggtt 40040611  T
Q  217 ttgatctct 225  Q
    ||| |||||    
T  40040610 ttggtctct 40040602  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 42898319 - 42898225
Alignment:
Q  17 tcacatttccacttcttctcaccgtgctttctactaaagtgcttttttatacctgtgaggtcaccaagtgctcttgaagggtcatggtggacaca 111  Q
    |||||||||||||||||||||||||||||||| |  |||||||| || ||||| || ||||| || |  |||||||| ||||||||||| |||||    
T  42898319 tcacatttccacttcttctcaccgtgctttctgcagaagtgcttcttgataccagttaggtcccccaaggctcttgatgggtcatggtgcacaca 42898225  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 5435530 - 5435576
Alignment:
Q  26 cacttcttctcaccgtgctttctactaaagtgcttttttatacctgt 72  Q
    |||||||||||||||||||| |||| ||||||||| ||||| |||||    
T  5435530 cacttcttctcaccgtgcttcctacaaaagtgcttctttatccctgt 5435576  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 38895962 - 38896011
Alignment:
Q  17 tcacatttccacttcttctcaccgtgctttctactaaagtgcttttttat 66  Q
    ||||| |||||||||||||||||||| || |||| ||||||||| |||||    
T  38895962 tcacacttccacttcttctcaccgtgtttcctacaaaagtgcttctttat 38896011  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 52248459 - 52248556
Alignment:
Q  16 ttcacatttccacttcttctcaccgtgctttctactaaagtgcttttttatacctgtgaggtcaccaagtgctcttgaagggtcatggtggacacagg 113  Q
    |||||||||||| ||||||||||| |||||||||| |||||||||||| |  |||||||||||||| |||||||||||||| |  |||||||| ||||    
T  52248459 ttcacatttccatttcttctcaccatgctttctacaaaagtgctttttcactcctgtgaggtcaccgagtgctcttgaaggattgtggtggacgcagg 52248556  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 40749411 - 40749193
Alignment:
Q  17 tcacatttccacttcttctcaccgtgctttctactaaagtgcttttttatacctgtgaggtcaccaagtgctcttgaagggtcatggtggacacaggtct 116  Q
    ||||| ||||| |||||||| || || ||||||||||| || || ||||| || ||||||||||| |  || || |  | ||| ||||||||||| || |    
T  40749411 tcacacttccatttcttctcgccatgttttctactaaaatgtttctttattccggtgaggtcacccaaggccctagccgcgtcgtggtggacacaagtat 40749312  T
Q  117 tctctggacagatgtaaactttcttc-ttgataacatctttgttggatctctgtctaagcttccatggaaggttgtgtcctcttctatgtagttgaaggt 215  Q
    |||| || |||||||| || || ||| ||| |    |||||||||||||| ||  | ||||||||||| |||||||| ||||||||||| || ||||| |    
T  40749311 tctccgggcagatgtatacctttttccttggt----tctttgttggatctttgctttagcttccatggtaggttgtgacctcttctatgaagctgaagat 40749216  T
Q  216 tttgatctctttggaaccctttg 238  Q
    | |||||||||||||| ||||||    
T  40749215 tctgatctctttggaatcctttg 40749193  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 33186615 - 33186538
Alignment:
Q  161 gatctctgtctaagcttccatggaaggttgtgtcctcttctatgtagttgaaggttttgatctctttggaaccctttg 238  Q
    ||||| ||||| || |||||||| || || ||||||||||||||||||||||| || ||||||||||| |||||||||    
T  33186615 gatctttgtctcagtttccatggtagattatgtcctcttctatgtagttgaagattctgatctctttgaaaccctttg 33186538  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 33186765 - 33186707
Alignment:
Q  8 gaacatgtttcacatttccacttcttctcaccgtgctttctactaaagtgcttttttat 66  Q
    |||||| | |||||||||||||| |||||||| || ||||||| |||||||||||||||    
T  33186765 gaacatttctcacatttccactttttctcaccatgttttctacaaaagtgcttttttat 33186707  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 5788826 - 5788859
Alignment:
Q  15 tttcacatttccacttcttctcaccgtgctttct 48  Q
    ||||||||||||||||||||||||| ||||||||    
T  5788826 tttcacatttccacttcttctcaccatgctttct 5788859  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 5789002 - 5789046
Alignment:
Q  194 cctcttctatgtagttgaaggttttgatctctttggaaccctttg 238  Q
    |||||||| || |||||||| |||||||||||||| |||||||||    
T  5789002 cctcttctgtgaagttgaagattttgatctctttgaaaccctttg 5789046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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