View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_low_57 (Length: 240)
Name: NF3906_low_57
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 42444728 - 42444502
Alignment:
| Q |
1 |
ttctccaactcgactcaattcaaactcatgaataactcatttcccctcgaaagcttaaatcaaatcaaccaaaagacaaagtgatggctatttgaattaa |
100 |
Q |
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| T |
42444728 |
ttctccaactcaactcaattcaaactcatgaataactcatttcctctcgaaagcttaaatcaaatcaaccaaaagacaaagtgatggatatttgaattaa |
42444629 |
T |
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| Q |
101 |
tcttaacactgaattcactctcactagtgtttgaattgtttcacgctatttttccatacacttccaattttatctatcagatg------aggaacttttc |
194 |
Q |
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||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
42444628 |
tcttaacactgaattcactctcaatggtgattgaattgtttcacgctatttttccatacacttccaattt----tatcagatgtcccgaaggaacttttc |
42444533 |
T |
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| Q |
195 |
tatacacttatttgctccacattgttgatat |
225 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42444532 |
tatacacttatttgctccacattgttgatat |
42444502 |
T |
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