View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_low_58 (Length: 238)
Name: NF3906_low_58
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 15133948 - 15134163
Alignment:
| Q |
1 |
ttctaaatctccagtttcaattcctaaccattttcaggtaagcatttagcacattcatcaaaaagaactgaaaaagctaatttgtgctctctagttttat |
100 |
Q |
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| T |
15133948 |
ttctaaatctccagtttcaattcctaaccattttcaggtaagcatttagcacattcatcaaaaagaactgaaaaagctaatttgtgctctctagttttat |
15134047 |
T |
|
| Q |
101 |
tttttgtcccccacttccaagttaaatgaagccaacatacatacaaatgtcttaatacaaaccgcaaaacctgtataccaattttcagaaactagtaact |
200 |
Q |
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| T |
15134048 |
tttttgtcccctacttccaagttaaat------ttcatatatacaaatttcataatacaaaccacaaaacctgtataccaattttcataaactagtaact |
15134141 |
T |
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| Q |
201 |
catcactctcttattacattgt |
222 |
Q |
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||||||| |||||||||||||| |
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| T |
15134142 |
catcactatcttattacattgt |
15134163 |
T |
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