View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_low_60 (Length: 235)
Name: NF3906_low_60
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 12275575 - 12275355
Alignment:
| Q |
1 |
aatttttcttaatacatgtgctttttgttaggagtacgagtattaagggatgaagaaagtatatgttagttgtcgctgtaatatgagtaagtctgggttt |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12275575 |
aatttttcttaatacatgtgcttttttttaggagtacgagtattaagggatgaagaaagtatatgttagttgtcgctgtaatatgagtaagtctgggttt |
12275476 |
T |
|
| Q |
101 |
taattcctnnnnnnngttcttatgttttatcgtataacatcacattctaatagattattccctcatttaaaaatgtcactcaaaagagctaccatggcat |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
12275475 |
taattcctaaaaaaagttcttatgttttatcgtataacatcacattctaatagattatttcctcatttaaaaatgtcactcaaaaaagctaccatggcat |
12275376 |
T |
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| Q |
201 |
gcatacattcattggacaact |
221 |
Q |
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||||||||||||||||||||| |
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| T |
12275375 |
gcatacattcattggacaact |
12275355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 14261152 - 14261049
Alignment:
| Q |
1 |
aatttttcttaatacatgtgctttttgttaggagtacgagtattaagggatgaagaaagtatatgttagttgtcgctgtaatatgagtaagtctgggttt |
100 |
Q |
| |
|
||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||||||||||||| |||||| |||| |||||| | ||| ||||| |
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| T |
14261152 |
aatttttcttaatacttgtgtattttgttatgagtacgcatattaagggatgaagaaagtatatgtttgttgtccatgtagtatgagcgaatctaggttt |
14261053 |
T |
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| Q |
101 |
taat |
104 |
Q |
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|||| |
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| T |
14261052 |
taat |
14261049 |
T |
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