View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_low_61 (Length: 231)
Name: NF3906_low_61
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_61 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 42076085 - 42075869
Alignment:
| Q |
14 |
tacttcataaaattaccttaatgagttaattgatgttgtgttatgttttaacaagctgttctannnnnnnngttggttgatttgattacaggcagatgtt |
113 |
Q |
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| T |
42076085 |
tacttcataaaattaccttaatgagttaattgatgttgtgttatgttttaacaagttgttct-ttttttttgttggttgatttgattacaggcagatgtt |
42075987 |
T |
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| Q |
114 |
tgtcatgcataccagttgttgataaaaggtggagtgaaagaagaaaacatagttgtgtttatgtatgatgatatagctaacaacgagttgaatcctaggc |
213 |
Q |
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| T |
42075986 |
tgtcatgcataccagttgttgataaaaggtggagtgaaagaagaaaacatagttgtgtttatgtatgatgatatagctaacaacgagttgaatcctaggc |
42075887 |
T |
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| Q |
214 |
ctggagttatcatcaacc |
231 |
Q |
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| T |
42075886 |
ctggagttatcatcaacc |
42075869 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 4493507 - 4493592
Alignment:
| Q |
102 |
caggcagatgtttgtcatgcataccagttgttgataaaaggtggagtgaaagaagaaaacatagttgtgtttatgtatgatgatat |
187 |
Q |
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| T |
4493507 |
caggctgatgtttgtcatgcgtatcaattgttgaggaaaggtggcttgaaagaagaaaacattattgttttcatgtatgatgatat |
4493592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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