View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_low_62 (Length: 227)
Name: NF3906_low_62
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 12844558 - 12844663
Alignment:
| Q |
1 |
aatacaaaaaagtggtgatgagcatgttgaagatttatcttgatagattttattgatgcttttattttgagttggacttatgctttgaagaaagggaaaa |
100 |
Q |
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| T |
12844558 |
aatacaaaaaagtggtgatgagcatgttgaatatttatcttgatagattttattgatgcttttattttgagttggacttatgctttgaagaaagggaaaa |
12844657 |
T |
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| Q |
101 |
gaagaa |
106 |
Q |
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|||||| |
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| T |
12844658 |
gaagaa |
12844663 |
T |
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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 12844734 - 12844787
Alignment:
| Q |
177 |
cattttgtgagttggatcatgtact---gttctatgttttgaagaatgagagat |
227 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12844734 |
cattttgtgagttggatcatgtactactgttctatgttttgaagaatgagagat |
12844787 |
T |
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