View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_low_68 (Length: 204)
Name: NF3906_low_68
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 41968854 - 41968665
Alignment:
| Q |
8 |
ggaggagcagagatctaagaactgaactagtaatgaactgtaaataaagaagaggtgatgaccaaaattatttacatgattttctatcaatgtacaaaag |
107 |
Q |
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| T |
41968854 |
ggaggaggagagatctaagaattgaactagtaatgaactgtaaataaagaagaggtgatgaccaaaattatttacatgattttctatcaatgtacaaaag |
41968755 |
T |
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| Q |
108 |
ggttccattaattcttta---------taatg---ttacatgaatgattttatttcaggctcatataattggagctaccattgaggctcc |
185 |
Q |
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| T |
41968754 |
ggttccattaattctttatatcctttttaatgttattacatgaatgattttatttcaggctcatataattggagctaccattgaggctcc |
41968665 |
T |
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Target: chr3 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 1235782 - 1235718
Alignment:
| Q |
121 |
ctttataatgttacatgaatgattttatttcaggctcatataattggagctaccattgaggctcc |
185 |
Q |
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| T |
1235782 |
ctttttaatgttacatgaatgattttatttcaggctcatataataggagctaccattgaggctcc |
1235718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 29521956 - 29522024
Alignment:
| Q |
8 |
ggaggagcagagatctaagaactgaactagtaatgaactgtaaataaagaagaggtgatgaccaaaatt |
76 |
Q |
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| T |
29521956 |
ggaggaggagagatctaggaattgaaggagtaatgaactgtaaataaagaagaggtgatgaccaaaatt |
29522024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 35739644 - 35739589
Alignment:
| Q |
20 |
atctaagaactgaactagtaatgaactgtaaataaagaagaggtgatgaccaaaat |
75 |
Q |
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||||||||| |||| |||||||||| ||||| ||||||||||||||||||||||| |
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| T |
35739644 |
atctaagaattgaaggagtaatgaaccgtaaagaaagaagaggtgatgaccaaaat |
35739589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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