View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_low_7 (Length: 628)
Name: NF3906_low_7
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 15 - 609
Target Start/End: Original strand, 15393457 - 15394067
Alignment:
| Q |
15 |
cagagagttacatatctgt---tacacggtggtgatttggcgtcgttgaggatcggcggtgtgacaatatgttgggaagaacggacatttgttaaataat |
111 |
Q |
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| T |
15393457 |
cagagagttacatatctgtaattacacggtggtgatttggcgtcgttgaggatcggcggtgagacattatgttgggaagaacggacatttgttaaataat |
15393556 |
T |
|
| Q |
112 |
ttgtttacttagctaaaatcttgttgatgaatggaaccacccagtgaagtgttttacttttgcttca-------gaatgttttgttttctgttaggagcc |
204 |
Q |
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| T |
15393557 |
ttgtttacttagctaaaatcttgttgatgaatggaaccacccagtgaagtgttttacttttgcttcattaaagagcatgttttgttttctgttaggagcc |
15393656 |
T |
|
| Q |
205 |
ctcaaacatcagttcaaaaagttagatagatagaaaatctttgtttgattttcaataaataataatatcactcgagaaatgatgtaaaatgatcgttgat |
304 |
Q |
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| T |
15393657 |
ctcaaacatcagttcaaaaagttagatagaaagaaaatctttgtttgattttcaataaatcataatatcactcgagaaatgatgtaaaatgatcgttgat |
15393756 |
T |
|
| Q |
305 |
gtcacttnnnnnnnnnnnnnnnnntcactacactctaccccaattttaaaaatacaataaaattgagttcagcttgcaaaatgaagttcactcaaatatg |
404 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15393757 |
gtcactttaataataataataatatcactacactcttccccaattttaaaaatacaataaaattgagttcagcttgcaaaatgaagttcactcaaatatg |
15393856 |
T |
|
| Q |
405 |
aagtttgccggcttcaatccaaacttatagatttgtttgaatccttgctttgacttggcagttttttggtaactacataagtttttgttctgtttccaat |
504 |
Q |
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| T |
15393857 |
aagtttgccggcttcaatccaaacttatagatttgtttgaatccttgctttgacttggcagttttttggtaactacataagtttttgttctgtttccaat |
15393956 |
T |
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| Q |
505 |
gttttctgta------nnnnnnngtgatggttagggttacactgaggacaagggagtatcagatagaaattagtagttggaagttattgaatacagttcg |
598 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15393957 |
gttttctgtatttttttttttttgtgatggttagggttacactgaggacaagggagtatcagatagaaattagtagttggaagttattgaatacagttcg |
15394056 |
T |
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| Q |
599 |
aaatggcttca |
609 |
Q |
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| T |
15394057 |
aaatggcttca |
15394067 |
T |
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