View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_low_8 (Length: 598)
Name: NF3906_low_8
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_8 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 13 - 585
Target Start/End: Complemental strand, 43644 - 43074
Alignment:
| Q |
13 |
aatataggacggagggagtggtatttttggttagttctcatgtctcattgtttgtcatttggctacatataaaactaacataaataaattgttgtctttc |
112 |
Q |
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| T |
43644 |
aatataggacggagggagtggtatttttggttagttctcatgtctcattgtttgtcatttggctacatataaaactaacataaataaattgttgtctttc |
43545 |
T |
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| Q |
113 |
tgtttgaacatatatatcactgtattgtttttctattcaaatagaaaatgaaacagtgtatgttaggaaaatagcaaaagatactccaactcagatatat |
212 |
Q |
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| T |
43544 |
tgtttgaacatatgt--cactgtattgtttttctattcaaatagaaaatgaaacagtgtatgttaggaaaatagcaaaagatactccaactcagatatat |
43447 |
T |
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| Q |
213 |
gaatttgtctctatattctaatgtcactgtaatgtaccttaattatgtaacatttgaatgttgcatcctaatttaatgaccgattgatttgtttccaagc |
312 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43446 |
gaatttatctctatattctaatgtcactgtaatgtaccttaattatgtaacatttgaatgttgcatcctaatttaatgaccgattgatttgtttccaagc |
43347 |
T |
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| Q |
313 |
agggaagaatttacagcacactgcctagaatttcaaagagaaattgacaatagagaaaattgtaaagtcaggactttgttggcagagaaatattcacttg |
412 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43346 |
agggaagaatttacaacacactgcctagaatttcaaagagaaattgacaatagagaaaattgtaaagtcaggactttgttggcagagaaatattcacttg |
43247 |
T |
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| Q |
413 |
aaaatgaaattcaacttctggatgagaagaattgtgttttgaaaaattcggttttggcatttgtagaggaaattcttgaagatcttcataattcaaactc |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43246 |
aaaatgaaattcaacttctggatgagaagaattgtgttttgaaaaattcggttttggcatttgtagaggaaattcttgaagatcttcataattcaaactc |
43147 |
T |
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| Q |
513 |
aggtaataatatatgtatacaaggaagtaggtttttcatgctagttattacttctgtgtttatattattattg |
585 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43146 |
aggtaataatatatgtatacaaggaagtaggtttttcatgctagttattacttctgtgtttatattattattg |
43074 |
T |
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