View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_low_9 (Length: 582)
Name: NF3906_low_9
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 483
Target Start/End: Original strand, 37593185 - 37593663
Alignment:
| Q |
17 |
ataataataatattgtaaatgaagagatatggagaagtaggtggcaagaacaagtggttgagttgaagaaaaggtctaatagacgtatggaacaaagagg |
116 |
Q |
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| T |
37593185 |
ataataataatattgtaaatgaagagatatggagaagtaggtggcaagaacaagtggttgagttgaagaaaaggtctaatagacgtatggaacaaagagg |
37593284 |
T |
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| Q |
117 |
aaggtcttggggtagcactagtagaatgaggacacaaagcatgaaagatcgaaactagttaattaattagtgattagtttattgctctgatttgtgatta |
216 |
Q |
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| T |
37593285 |
aaggtcttggggtagcactagcagaatgaggacacaaagcatgaaagatcgaaactagttaattaattagtgattagtttattgctctgatttgtgatta |
37593384 |
T |
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| Q |
217 |
acttgttgctattttctttgatctattggtttaattctttcatgtataattttaaatgataattaaaatgtttaaggaagttttctcttgaacatgt--- |
313 |
Q |
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| T |
37593385 |
acttgttgctattttctttgatctataggtttaattctttcatgtataattttaaatgataattaaaatgtttaaggaagttttgtcttgaacatgtatt |
37593484 |
T |
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| Q |
314 |
----------------attaaaatggtacaaaatgttattgaaaattacnnnnnnnnccaagtcaaaagagtagg--tatgtacccaccaacaactagta |
395 |
Q |
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| T |
37593485 |
aaaagttgtaaccagaattaaaatggtacaaaatgttattgaaaattac--aaaaaaccaagtcaaaagagtaggtatatgtacccaccaacaactagta |
37593582 |
T |
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| Q |
396 |
ttgaggaccacacaaggtagc-aaaatagaaaaggaaatatcaaatattgaaactttattgactctggctctgcatctcctatgattcc |
483 |
Q |
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| T |
37593583 |
ttgaggaccaca-aaggtagcaaaaatagaaaagg-------aaatattgaaactttattgactctggctctgcatctcctatgattcc |
37593663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 517 - 572
Target Start/End: Original strand, 37593694 - 37593749
Alignment:
| Q |
517 |
ggtttaacaagatgttgcacttgcagtactccagaactcagcctttttcacctttg |
572 |
Q |
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| T |
37593694 |
ggtttaacaagatgttgcacttgcagtactccagaactcagcctttttcacctttg |
37593749 |
T |
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