View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3907_low_1 (Length: 563)
Name: NF3907_low_1
Description: NF3907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3907_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 19 - 553
Target Start/End: Complemental strand, 19342758 - 19342236
Alignment:
| Q |
19 |
tctgccttctgctttcttgtcatcaccttctcttcttccccatgtgcatgatgaacattatgtgacctcgattcaaccttcaaaatttccataaaatcaa |
118 |
Q |
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| T |
19342758 |
tctgccttctgcttccttgtcatcaccttctcttcttccccatgtgcatgatgaacattatgtgacctcgattcaaccttcaaaatttccataaaatcaa |
19342659 |
T |
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| Q |
119 |
atatagaaccatatggaaaagaaagaagaaaacaatgaaagaatatgaacataccttcattttgtgcttctttgtttacaatgagcaaaagaaaagcacg |
218 |
Q |
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| T |
19342658 |
atatagaaccatatggaaaagaaagaagaaaacaatgaaagaatatgaacataccttcattttgtgcttctttgtttacaatgagcaaaagaaaagcacg |
19342559 |
T |
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| Q |
219 |
taacttaaagagtttttgaactttaacatggtatgcattaaataaccattctgattctatgaacaatttcacatgatcataggttggagctga-acaaca |
317 |
Q |
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| T |
19342558 |
taactt-aagagtttttgaactttaacatggtatgcattaaataaccattctgattctatgaacaatttcacatgatcataggttgtagctgagacaaca |
19342460 |
T |
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| Q |
318 |
atagtcttgaaatgccacgtgcatgtagttctcactaagaaaccaaaattttctgtcttcactacaatatgccacgtgagctaaggattgtaagttcttg |
417 |
Q |
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| T |
19342459 |
atagtcttgaaatgccacgtgcatgtagttctcacgaagaaaccaaaattttctgtcttcactacaatatgccacgtgagctaaggattgtaaattcttg |
19342360 |
T |
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| Q |
418 |
acacgtggacaactatgtatgttttacctcattgcagtgttgacatgtgggaaagccatgtttattttttgttatttgttccacctctaacacacaacat |
517 |
Q |
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|||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
19342359 |
acacgtggacaactatgtatgttttacctcgttgcaatg-tgacatgtgggaaagcca-----------tgttatttgttccacctctaacacacaacat |
19342272 |
T |
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| Q |
518 |
catattaattgctcatttgttctcatcctttctctg |
553 |
Q |
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| T |
19342271 |
catattaattgttcatttgttctcatcctttctctg |
19342236 |
T |
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