View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3907_low_2 (Length: 532)
Name: NF3907_low_2
Description: NF3907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3907_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 19 - 529
Target Start/End: Original strand, 55016290 - 55016798
Alignment:
| Q |
19 |
aaagtgatggaaaatgtggagatcccgaaatggtaacttccgactaatcataactaacttttaactactttgtatttggtactacaaattttggaggtaa |
118 |
Q |
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| T |
55016290 |
aaagtgatggaaaatgtggagatcccgaaatggtaacttccgactaatcataactaacttttaactactttgtatttggtactacaaattttggaggtaa |
55016389 |
T |
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| Q |
119 |
tataattaactctctttgaccatttatgtcgaaaatataaacaaaaattggtcaaataaagttaatgtgcttgtctagattaaacatcaacnnnnnnnnn |
218 |
Q |
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| T |
55016390 |
tataattaactctctttgaccatttatgtcgaaaatataaacaaaaattggtcaaataaagttaatgtgcttgtctagattaaacatcaactttttttt- |
55016488 |
T |
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| Q |
219 |
naattaatctttgcatatgtttgagaccaaattaaaatttgttataagtattttaaagaatattgaactaattctaattaatatgcaactatatgtgaca |
318 |
Q |
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| T |
55016489 |
-aattaatctttgcatatgtttgagaccaaattaaaatttgttatatgtattttaaagaatattgaactaattctaattaatatgcaactatatgtgaca |
55016587 |
T |
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| Q |
319 |
ggtgagtgccattggtgctgcttatgtggattcattgtttggtttggaagtgcctagtagagggatattgggagacgaggaattggttacgctcgtgtca |
418 |
Q |
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| T |
55016588 |
ggtgagtgccattggtgctgcttatgtggattcattgtttggtttggaagtgcctagtagagggatattgggagacgaggaattggttacgctcgtgtca |
55016687 |
T |
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| Q |
419 |
gagattatcagttcggttactgacacgagcgcaacggccattgaatgggctttgcgtcatttagtgatggatcaagagagtcaagagaggttgtatagag |
518 |
Q |
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| T |
55016688 |
gagattatcagtgctggtactgacacgagcgcaacggccattgaatgggctttgcttcatttagtgatggatcaagagattcaagagaggttgtatagag |
55016787 |
T |
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| Q |
519 |
aaattgttgat |
529 |
Q |
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| T |
55016788 |
aaattgttgat |
55016798 |
T |
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Back To:
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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 7974890 - 7974854
Alignment:
| Q |
150 |
aaaatataaacaaaaattggtcaaataaagttaatgt |
186 |
Q |
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| T |
7974890 |
aaaatataaacaaaaattggtcaataaaagttaatgt |
7974854 |
T |
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