View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3907_low_4 (Length: 261)
Name: NF3907_low_4
Description: NF3907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3907_low_4 |
 | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 28 - 250
Target Start/End: Original strand, 21625769 - 21625991
Alignment:
| Q |
28 |
caacaatttccagaaattatcattcatgaaaatcacttaatatctcatactaatcactgtaccaacgtgaaggtatcaattctaattatttaaattcaag |
127 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
21625769 |
caacaatttcaagaaattatcattcatgaaaatcacttaatatctcatactaatcactttaccaatgtaaaggtatcaattctaattatttaaattcaag |
21625868 |
T |
|
| Q |
128 |
tctaggagaggaaacccacctcaaagaacaacttcctcttgatgcagtcttgacccaaaactctgtctccaacaaggactcttgtcctgcatcaatcctt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21625869 |
tctaggagaggaaacccacctcaaagaacaacttcctcttgatgcagtcttgacccaaaactctgtctccaacaagcactcttgtcctgcatcaatcctt |
21625968 |
T |
|
| Q |
228 |
caatttcggttccttggctctct |
250 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
21625969 |
caatttcggttccttggctctct |
21625991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 117 - 230
Target Start/End: Complemental strand, 336397 - 336284
Alignment:
| Q |
117 |
ttaaattcaagtctaggagaggaaacccacctcaaagaacaacttcctcttgatgcagtcttgacccaaaactctgtctccaacaaggactcttgtcctg |
216 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
336397 |
ttaagttcaagcctaggagaggaaacccacctcaaatgacaacttctggttgatgcagtcttgacccaaaactctgtctccaacaaggactcttgtcctg |
336298 |
T |
|
| Q |
217 |
catcaatccttcaa |
230 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
336297 |
catcaatccttcaa |
336284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University