View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3908_high_1 (Length: 273)
Name: NF3908_high_1
Description: NF3908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3908_high_1 |
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| [»] scaffold0088 (3 HSPs) |
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Alignment Details
Target: scaffold0088 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: scaffold0088
Description:
Target: scaffold0088; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 46573 - 46660
Alignment:
| Q |
17 |
cgtagtacgatatacaataaattataatccatcgttttatcttttttcaattcttttaatttatatttctcgtatgattaataaaaaa |
104 |
Q |
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| T |
46573 |
cgtagtacgatatacaataaattataatccatcgtcttatcttttttcaattcttttaatttatatttctcgtatcattaataaaaaa |
46660 |
T |
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Target: scaffold0088; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 190 - 273
Target Start/End: Original strand, 46914 - 46998
Alignment:
| Q |
190 |
ataagagacata-ttttatgggcaaagccacaataaaaaacatttaaacacacatacataggaaaataaacatgaatgattcttt |
273 |
Q |
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| T |
46914 |
ataagagacatacttttacggacaaagccacaataaaaaacatttaaacacacatacataggaaaataaacatgaatgattcttt |
46998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0088; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 46791 - 46890
Alignment:
| Q |
102 |
aaacactttacgttattggtgttttgcattaattttaaacatgaaatttattggctctctcnnnnnnntaaatttgttggttttcgatataagagacata |
201 |
Q |
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| T |
46791 |
aaacactttacgttattggtgatttgcattaattttaaacatgaaatttataggctctctcaaaaaaataaatttgttggtttttgatataagagacata |
46890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 9227881 - 9227831
Alignment:
| Q |
51 |
ttttatcttttttcaattcttttaatttatatttctcgtatgattaataaa |
101 |
Q |
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| T |
9227881 |
ttttatcttttttcaattcttttaatttatgtttttcatacaattaataaa |
9227831 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 84
Target Start/End: Complemental strand, 36272120 - 36272091
Alignment:
| Q |
55 |
atcttttttcaattcttttaatttatattt |
84 |
Q |
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| T |
36272120 |
atcttttttcaattcttttaatttatattt |
36272091 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 14384608 - 14384580
Alignment:
| Q |
52 |
tttatcttttttcaattcttttaatttat |
80 |
Q |
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| T |
14384608 |
tttatcttttttcaattcttttaatttat |
14384580 |
T |
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