View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3908_high_2 (Length: 241)

Name: NF3908_high_2
Description: NF3908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3908_high_2
NF3908_high_2
[»] chr4 (5 HSPs)
chr4 (1-227)||(4644882-4645108)
chr4 (137-227)||(901593-901683)
chr4 (46-224)||(42459154-42459333)
chr4 (94-217)||(33319341-33319465)
chr4 (144-215)||(30844939-30845010)
[»] scaffold0481 (1 HSPs)
scaffold0481 (67-227)||(10508-10669)
[»] chr2 (4 HSPs)
chr2 (45-227)||(15342900-15343083)
chr2 (51-227)||(32467239-32467415)
chr2 (144-208)||(3408456-3408520)
chr2 (157-210)||(16363165-16363218)
[»] chr6 (2 HSPs)
chr6 (94-226)||(25062480-25062613)
chr6 (67-179)||(29603154-29603266)
[»] chr7 (8 HSPs)
chr7 (145-224)||(28244420-28244499)
chr7 (94-226)||(20216358-20216491)
chr7 (144-215)||(31188240-31188311)
chr7 (144-208)||(39973439-39973503)
chr7 (144-208)||(47247688-47247752)
chr7 (184-227)||(4577979-4578022)
chr7 (156-227)||(26630486-26630557)
chr7 (144-208)||(20219336-20219400)
[»] chr5 (7 HSPs)
chr5 (9-181)||(32421062-32421232)
chr5 (137-227)||(17221757-17221847)
chr5 (144-224)||(43453173-43453253)
chr5 (156-215)||(38364923-38364982)
chr5 (157-215)||(6658717-6658775)
chr5 (94-124)||(17221861-17221891)
chr5 (144-210)||(20828372-20828438)
[»] chr3 (7 HSPs)
chr3 (94-227)||(23458483-23458617)
chr3 (144-215)||(51897504-51897575)
chr3 (147-208)||(8626628-8626689)
chr3 (154-227)||(27991685-27991758)
chr3 (144-215)||(39348083-39348154)
chr3 (147-215)||(42722970-42723038)
chr3 (144-215)||(43722387-43722458)
[»] chr8 (5 HSPs)
chr8 (137-215)||(8269109-8269187)
chr8 (144-227)||(14090408-14090491)
chr8 (144-215)||(36831834-36831905)
chr8 (144-215)||(42277714-42277785)
chr8 (144-193)||(27470687-27470736)
[»] chr1 (6 HSPs)
chr1 (145-215)||(42097082-42097152)
chr1 (144-208)||(50543595-50543659)
chr1 (144-215)||(43628339-43628410)
chr1 (145-215)||(28793668-28793738)
chr1 (146-215)||(10885700-10885769)
chr1 (144-217)||(23047431-23047504)
[»] scaffold0009 (1 HSPs)
scaffold0009 (144-227)||(235377-235460)
[»] scaffold0391 (1 HSPs)
scaffold0391 (168-208)||(490-530)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 4645108 - 4644882
Alignment:
Q  1 atagacgtgatacatgataagcaaaacaagactaatataatgacagcatggtggtggcgtgaatgactgagagccaccgatgttcagtggatacaggata 100  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  4645108 atagacgcgatacatgataagcaaaacaagactaatattatgacagcatggtggtggcgtgaaggactgagagccaccgatgttcagtggatgcaggata 4645009  T
Q  101 ccagctacagccagattgaccacggttgtgttatgtatttgcagagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtg 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  4645008 ccagctacagccagattgaccacggttgtgttatgcatttgcagagaggtgacacgaggagacatcgagcttccatcttttgtttggggagatgatagtg 4644909  T
Q  201 acacttgatgttgtgtcgtgtttgctg 227  Q
    |||||||||| ||||||||||||||||    
T  4644908 acacttgatgatgtgtcgtgtttgctg 4644882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 901593 - 901683
Alignment:
Q  137 atttgcagagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctg 227  Q
    ||||||||||||||| ||||| ||||| | ||||||||||||||  ||||||||||||| |||||||||||||| |||||| |||||||||    
T  901593 atttgcagagaggtggcacgatgagactttgagcttccatcttctatttggggagatgacagtgacacttgatgatgtgtcatgtttgctg 901683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 46 - 224
Target Start/End: Complemental strand, 42459333 - 42459154
Alignment:
Q  46 gcatggtggtggcgtgaatgactgagagccaccgatgttcagtggatacaggataccagctacagccagattgaccacggt-tgtgttatgtatttgcag 144  Q
    |||||||||||||||||  ||||||| ||||||| | ||   ||  | |||||||| | ||||||||||||| |||| |   | |||| || |||||| |    
T  42459333 gcatggtggtggcgtgatagactgagtgccaccggtatttcttgacttcaggatacaaactacagccagattaaccatgacctatgttctgcatttgcgg 42459234  T
Q  145 agaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttg 224  Q
    ||||||| ||||||||||| |||||||||||| ||||  ||  |||||||| |||||||||||||| |||||| ||||||    
T  42459233 agaggtgccacgaggagacttcgagcttccatattccaattaaggagatgacagtgacacttgatgatgtgtcatgtttg 42459154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 217
Target Start/End: Complemental strand, 33319465 - 33319341
Alignment:
Q  94 caggataccagctacagccagattgaccacg-gttgtgttatgtatttgcagagaggtgacacgaggagacatcgagcttccatcttccgtttggggaga 192  Q
    ||||||| |||||||| ||||||||||  |  |||||||| || |||||  || || || ||||||||||||||||| ||||||||||||| || |||||    
T  33319465 caggatagcagctacaaccagattgactgcaagttgtgttttgcatttgtggatagatggcacgaggagacatcgagtttccatcttccgtgtgcggaga 33319366  T
Q  193 tgatagtgacacttgatgttgtgtc 217  Q
    ||| ||||||||| |||| ||||||    
T  33319365 tgacagtgacactcgatgatgtgtc 33319341  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 30845010 - 30844939
Alignment:
Q  144 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtg 215  Q
    |||| ||| ||||||||||| || |||||||| |||||||||| |||||| | ||| |||||||||| ||||    
T  30845010 gagatgtggcacgaggagacttccagcttccaccttccgtttgaggagataacagtcacacttgatgatgtg 30844939  T

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Target: scaffold0481 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 67 - 227
Target Start/End: Original strand, 10508 - 10669
Alignment:
Q  67 ctgagagccaccgatgttcagtggatacaggataccagctacagccagattgaccacgg-ttgtgttatgtatttgcagagaggtgacacgaggagacat 165  Q
    |||||||| | |||| |||| ||| | ||||||| |||||||| |||||||| |||||| ||||||| || ||||||||||||||  |||||||||||||    
T  10508 ctgagagcaatcgatcttcaatggttgcaggatagcagctacacccagattggccacgggttgtgttgtgcatttgcagagaggtcgcacgaggagacat 10607  T
Q  166 cgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctg 227  Q
    ||||| |||||||| ||||| ||||||||| |||||||||||||| |||||| |||||||||    
T  10608 cgagcctccatcttgcgtttcgggagatgacagtgacacttgatgatgtgtcatgtttgctg 10669  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 45 - 227
Target Start/End: Original strand, 15342900 - 15343083
Alignment:
Q  45 agcatggtggtggcgtgaatgactgagagccaccgatgttcagtggatacaggataccagctacagccagattgaccacg-gttgtgttatgtatttgca 143  Q
    |||| |||||||||||||  | ||||||||||||| | |||||| | || |||||||| |||||| |||||||||||||  |||||||| || ||||||     
T  15342900 agcacggtggtggcgtgatggtctgagagccaccggtcttcagttgctataggataccggctacaaccagattgaccacatgttgtgttctgcatttgcg 15342999  T
Q  144 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctg 227  Q
    |||||||| |||  |||||||||||||||||||||||| ||| |||||||||| |||| ||| |||| |||||| |||||||||    
T  15343000 gagaggtggcacacggagacatcgagcttccatcttccattttgggagatgattgtgatactcgatgatgtgtcatgtttgctg 15343083  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 51 - 227
Target Start/End: Complemental strand, 32467415 - 32467239
Alignment:
Q  51 gtggtggcgtgaatgactgagagccaccgatgttcagtggatacaggataccagctacagccagattgaccacggt-tgtgttatgtatttgcagagagg 149  Q
    ||||||| ||||| ||||||||||||||  | || ||||| | ||| |||||||||||| | ||||| || | ||  |||||| ||||||||| ||||||    
T  32467415 gtggtggtgtgaaggactgagagccaccagtctttagtggttgcagaataccagctacaac-agattaactatgggctgtgttctgtatttgcggagagg 32467317  T
Q  150 tgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctg 227  Q
    || |||||||| |||||||||||||||||||| |||  |||||||| |||||||||||||| |||||| |||||||||    
T  32467316 tggcacgaggatacatcgagcttccatcttccattttaggagatgacagtgacacttgatgatgtgtcatgtttgctg 32467239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 3408520 - 3408456
Alignment:
Q  144 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttga 208  Q
    |||||||| ||||||||||| || |||||||| ||||||||| ||||||||| ||| ||||||||    
T  3408520 gagaggtggcacgaggagacttccagcttccaccttccgtttcgggagatgacagtcacacttga 3408456  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 16363165 - 16363218
Alignment:
Q  157 aggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatg 210  Q
    ||||||| || ||||||||||||| | |||||||||| |||| |||||||||||    
T  16363165 aggagacgtctagcttccatcttctgattggggagatcatagcgacacttgatg 16363218  T

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Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 94 - 226
Target Start/End: Complemental strand, 25062613 - 25062480
Alignment:
Q  94 caggataccagctacagccagattgaccacggt-tgtgttatgtatttgcagagaggtgacacgaggagacatcgagcttccatcttccgtttggggaga 192  Q
    ||||||| ||||||| ||||||||||||||||| ||   | || ||||   |||||||||||||||||||| ||||||||||||||| |||||||| |||    
T  25062613 caggatatcagctactgccagattgaccacggtctgctatctgcatttatggagaggtgacacgaggagacttcgagcttccatctttcgtttgggaaga 25062514  T
Q  193 tgatagtgacacttgatgttgtgtcgtgtttgct 226  Q
    ||| |||||||||||||| |||||| ||||||||    
T  25062513 tgacagtgacacttgatgatgtgtcatgtttgct 25062480  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 179
Target Start/End: Complemental strand, 29603266 - 29603154
Alignment:
Q  67 ctgagagccaccgatgttcagtggatacaggataccagctacagccagattgaccac-ggttgtgttatgtatttgcagagaggtgacacgaggagacat 165  Q
    |||||||| |||| | || ||||| | ||||||||||||||| |||||||||||||| || ||| || || | |||||||||| || ||| |||||||||    
T  29603266 ctgagagctaccggtctttagtggctgcaggataccagctactgccagattgaccacgggctgtcttctgca-ttgcagagagatggcacaaggagacat 29603168  T
Q  166 cgagcttccatctt 179  Q
    ||| ||| ||||||    
T  29603167 cgatctttcatctt 29603154  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 28244420 - 28244499
Alignment:
Q  145 agaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttg 224  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||    
T  28244420 agaggtgtcacgaggagacttcgagcttccatcttccgtttggggagatgacagtgacacttgatgatgtgtcatgtttg 28244499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 226
Target Start/End: Complemental strand, 20216491 - 20216358
Alignment:
Q  94 caggataccagctacagccagattgaccacggt-tgtgttatgtatttgcagagaggtgacacgaggagacatcgagcttccatcttccgtttggggaga 192  Q
    ||||| ||||||||||||  ||||||||||||| |   || || |||||  ||||||||  |||||||||| ||||| || || ||||||||||||||||    
T  20216491 caggacaccagctacagcttgattgaccacggtctaatttctgcatttgtggagaggtggtacgaggagacttcgagttttcaccttccgtttggggaga 20216392  T
Q  193 tgatagtgacacttgatgttgtgtcgtgtttgct 226  Q
    ||| | |||||||||||| |||||| ||||||||    
T  20216391 tgacaatgacacttgatgatgtgtcttgtttgct 20216358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 31188311 - 31188240
Alignment:
Q  144 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtg 215  Q
    |||||||| ||| ||||||| || |||||||| ||||||||||||||||||| ||| |||||||||| ||||    
T  31188311 gagaggtggcacaaggagacttccagcttccaccttccgtttggggagatgacagtcacacttgatgatgtg 31188240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 39973439 - 39973503
Alignment:
Q  144 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttga 208  Q
    ||||||||  |||||||||| || |||||||| ||||||||||||||||||| | | ||||||||    
T  39973439 gagaggtggtacgaggagacttccagcttccaccttccgtttggggagatgacaatcacacttga 39973503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 47247688 - 47247752
Alignment:
Q  144 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttga 208  Q
    |||||||| ||||||||||| || |||||||| ||||| |||| |||||||| ||| ||||||||    
T  47247688 gagaggtggcacgaggagacttccagcttccaccttccatttgtggagatgacagtcacacttga 47247752  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 4577979 - 4578022
Alignment:
Q  184 ttggggagatgatagtgacacttgatgttgtgtcgtgtttgctg 227  Q
    |||||||||||| |||||||||||||| |||||| |||||||||    
T  4577979 ttggggagatgaaagtgacacttgatgatgtgtcatgtttgctg 4578022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 26630557 - 26630486
Alignment:
Q  156 gaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctg 227  Q
    |||||||| |||||||||||| || | |||||||||| || | ||||||||||||  ||||| |||||||||    
T  26630557 gaggagacttcgagcttccatatttcatttggggagaggacaatgacacttgatgacgtgtcttgtttgctg 26630486  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 20219400 - 20219336
Alignment:
Q  144 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttga 208  Q
    |||||||| ||| ||||||| || |||||||| |||| |||||||||||||| | | ||||||||    
T  20219400 gagaggtggcacaaggagacttccagcttccaccttctgtttggggagatgacaatcacacttga 20219336  T

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Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 32421062 - 32421232
Alignment:
Q  9 gatacatgataagcaaaacaagactaatataatgacagcatggtggtggcgtgaatgactgagagccaccgatgttcagtggatacaggataccagctac 108  Q
    |||||||||| | ||||||||| |||   | |||||||||  ||||||||||||  ||||||||||||||  | |||||||| | || |||| || ||||    
T  32421062 gatacatgatgatcaaaacaaggcta---tcatgacagcacagtggtggcgtgatggactgagagccaccagtcttcagtggctgcaagatatcaactac 32421158  T
Q  109 agccagattgaccacg-gttgtgttatgtatttgcagagaggtgacacgaggagacatcgagcttccatcttcc 181  Q
    | ||| |||||||||| |||||||| ||  ||| | |||||||| |||||||||||||||||||||||||||||    
T  32421159 aaccatattgaccacgtgttgtgttctgcctttacggagaggtggcacgaggagacatcgagcttccatcttcc 32421232  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 17221847 - 17221757
Alignment:
Q  137 atttgcagagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctg 227  Q
    |||||| |||||||| ||||||||||| ||||||||||||| ||| ||||| ||||||| |||||||||||||| |||||| |||||||||    
T  17221847 atttgcggagaggtggcacgaggagacttcgagcttccatcctccttttggcgagatgacagtgacacttgatgatgtgtcctgtttgctg 17221757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 43453253 - 43453173
Alignment:
Q  144 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttg 224  Q
    |||||||| || |||||||  || |||||||||||||||||||||||||||| | |||||||||||| |||||| ||||||    
T  43453253 gagaggtggcatgaggagatttcaagcttccatcttccgtttggggagatgacaatgacacttgatgatgtgtcatgtttg 43453173  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 38364923 - 38364982
Alignment:
Q  156 gaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtg 215  Q
    |||||||| || || ||||| ||||| ||||||||||||||||| |||||||||| ||||    
T  38364923 gaggagacttctagattccaccttccatttggggagatgatagtcacacttgatgatgtg 38364982  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 6658717 - 6658775
Alignment:
Q  157 aggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtg 215  Q
    ||||||| || |||||||| |||| |||||||||||||| ||| |||||||||| ||||    
T  6658717 aggagacttccagcttccaccttctgtttggggagatgacagtcacacttgatgatgtg 6658775  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 124
Target Start/End: Complemental strand, 17221891 - 17221861
Alignment:
Q  94 caggataccagctacagccagattgaccacg 124  Q
    |||||||||||||||||||||||||||||||    
T  17221891 caggataccagctacagccagattgaccacg 17221861  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 20828438 - 20828372
Alignment:
Q  144 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatg 210  Q
    |||||||| ||||||||||| || || ||||| |||||||| |||||| ||| ||| ||||||||||    
T  20828438 gagaggtggcacgaggagacttccaggttccaccttccgttcggggaggtgacagtcacacttgatg 20828372  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 227
Target Start/End: Original strand, 23458483 - 23458617
Alignment:
Q  94 caggataccagctacagccagattgaccacggt-tgtgttatgtatttgcagagaggtgacacgaggagacatcgagcttccatcttccgtttggggaga 192  Q
    ||||||| |||||||||||||||||| |||||  | |||| || | |||  ||||| || |||||||||||||||| ||| ||||||||||||||||| |    
T  23458483 caggatatcagctacagccagattgaacacgggctttgttctgcaattgtggagagatggcacgaggagacatcgaactttcatcttccgtttggggata 23458582  T
Q  193 tgatagtgacacttgatgttgtgtcgtgtttgctg 227  Q
    |||||||| |||| |||| |||||| |||||||||    
T  23458583 tgatagtggcactggatgatgtgtcatgtttgctg 23458617  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 51897504 - 51897575
Alignment:
Q  144 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtg 215  Q
    |||||||| ||||||||||| || |||||||| ||||||||||||||||||| | | |||||||||| ||||    
T  51897504 gagaggtggcacgaggagacttccagcttccaccttccgtttggggagatgacaatcacacttgatgatgtg 51897575  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 8626689 - 8626628
Alignment:
Q  147 aggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttga 208  Q
    ||||| ||||||||||| || |||||||| ||||||||||||||||||| ||| ||||||||    
T  8626689 aggtggcacgaggagacttccagcttccaccttccgtttggggagatgacagtcacacttga 8626628  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 27991758 - 27991685
Alignment:
Q  154 acgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctg 227  Q
    ||||| |||| ||||||||||||||||| |||  ||||||||  ||||||||||||| |||||| |||||||||    
T  27991758 acgagaagacttcgagcttccatcttccatttacggagatgacggtgacacttgatgatgtgtcatgtttgctg 27991685  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 39348083 - 39348154
Alignment:
Q  144 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtg 215  Q
    |||||||| |||||||| || || |||||||| ||||||||||||||||||| | | |||||||||| ||||    
T  39348083 gagaggtggcacgaggatacttccagcttccaccttccgtttggggagatgacaatcacacttgatgatgtg 39348154  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 42722970 - 42723038
Alignment:
Q  147 aggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtg 215  Q
    ||||| ||||||||||| || |||||||| ||| |||||||||| |||| ||| |||||||||| ||||    
T  42722970 aggtggcacgaggagacttccagcttccacctttcgtttggggaaatgacagtcacacttgatgatgtg 42723038  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 43722387 - 43722458
Alignment:
Q  144 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtg 215  Q
    |||||||| ||||||||||| || |||||||| |||| |||| ||||||||| |||  ||||||||| ||||    
T  43722387 gagaggtggcacgaggagacttccagcttccaccttctgtttagggagatgacagtctcacttgatgatgtg 43722458  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 8269109 - 8269187
Alignment:
Q  137 atttgcagagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtg 215  Q
    |||||| |||||||| |||||||||||||| |||||||||||||| ||| ||||||||| |||||||||| ||| ||||    
T  8269109 atttgcggagaggtggcacgaggagacatcaagcttccatcttccatttcgggagatgacagtgacacttaatgatgtg 8269187  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 14090491 - 14090408
Alignment:
Q  144 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctg 227  Q
    |||||||||||||||||||| ||||| ||||| ||| | || |||| ||||| |||||||||||||| |||||| |||||||||    
T  14090491 gagaggtgacacgaggagacttcgagtttccacctttcattaggggggatgacagtgacacttgatgatgtgtcatgtttgctg 14090408  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 36831834 - 36831905
Alignment:
Q  144 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtg 215  Q
    |||||||| ||||||||||| || |||||||| ||||||||||||||||||| ||| |||||||||| ||||    
T  36831834 gagaggtggcacgaggagacttccagcttccaccttccgtttggggagatgacagtcacacttgatgatgtg 36831905  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 42277714 - 42277785
Alignment:
Q  144 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtg 215  Q
    |||||||| ||||||||||| || | |||||| ||||||||||||||||||| ||| |||||||||| ||||    
T  42277714 gagaggtggcacgaggagacttccaacttccaccttccgtttggggagatgacagtcacacttgatgatgtg 42277785  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 27470736 - 27470687
Alignment:
Q  144 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagat 193  Q
    |||||||||||||||||||| || |||||||| |||||||||||||||||    
T  27470736 gagaggtgacacgaggagacttccagcttccaccttccgtttggggagat 27470687  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 42097152 - 42097082
Alignment:
Q  145 agaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtg 215  Q
    ||||||||||||||||||| || |||||||| ||||||||| ||||||||| ||| |||||||||| ||||    
T  42097152 agaggtgacacgaggagacttccagcttccaccttccgtttagggagatgacagtcacacttgatgatgtg 42097082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 50543595 - 50543659
Alignment:
Q  144 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttga 208  Q
    |||||||| ||||||||||| || |||||||| ||||||||||||||||||| ||| ||||||||    
T  50543595 gagaggtggcacgaggagacttccagcttccaccttccgtttggggagatgacagtcacacttga 50543659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 43628410 - 43628339
Alignment:
Q  144 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtg 215  Q
    |||||||| ||||||||||| || | |||||| ||||||||||||||||||| ||| |||||||||| ||||    
T  43628410 gagaggtggcacgaggagacttccaccttccaccttccgtttggggagatgacagtcacacttgatgatgtg 43628339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 28793738 - 28793668
Alignment:
Q  145 agaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtg 215  Q
    ||||||| ||||||||||| || |||||||| ||||| ||||||||||||| ||| |||||||||| ||||    
T  28793738 agaggtggcacgaggagacttccagcttccaccttccatttggggagatgacagtcacacttgatgatgtg 28793668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 10885700 - 10885769
Alignment:
Q  146 gaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtg 215  Q
    |||||| ||||||||||| || |||||||| ||||| |||||||| |||| ||| |||||||||| ||||    
T  10885700 gaggtggcacgaggagacttccagcttccagcttccatttggggaaatgaaagtcacacttgatgatgtg 10885769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 23047431 - 23047504
Alignment:
Q  144 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtc 217  Q
    ||||| ||||||||| ||||||| ||||||| |||| || |||||||||||| ||||||| ||| || ||||||    
T  23047431 gagagatgacacgagaagacatctagcttccgtctttcgattggggagatgagagtgacatttgttggtgtgtc 23047504  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 235377 - 235460
Alignment:
Q  144 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctg 227  Q
    |||||||| |||||| |||| || |||||||| ||||| ||||||||||||| | | |||||||||| |||| | |||||||||    
T  235377 gagaggtggcacgagtagacttccagcttccaccttccatttggggagatgacattcacacttgatgatgtggcctgtttgctg 235460  T

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Target: scaffold0391 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 530 - 490
Alignment:
Q  168 agcttccatcttccgtttggggagatgatagtgacacttga 208  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  530 agcttccatcttccgatttgggagatgatagtgacacttga 490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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