View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3909_high_15 (Length: 262)
Name: NF3909_high_15
Description: NF3909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3909_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 935586 - 935814
Alignment:
| Q |
18 |
aagataacatcaggaatggatttggtaacacttcgttgagtcacaggttgtcctgttctcgtagctaccatagctgctggaggtgccactattctggtga |
117 |
Q |
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| T |
935586 |
aagataacatcaggaatggatttggtaacacttcgttgaggcacaggttgtcctgttctcgtagctaccatagctgctggaggtgccactattctggtga |
935685 |
T |
|
| Q |
118 |
tcatcatagaatcatctacattactcatatttacattcttaatcatgaaatcagtggtaattatatatatacttgttagacttttggttcaagcaagggt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
935686 |
tcatcatagaatcatctacattactcatatttacattcttaatcatgaaatcagtggtaattatatatatacttgttagacttttggttcaagcaagggt |
935785 |
T |
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| Q |
218 |
tgccgttattcattactcatcgatcacag |
246 |
Q |
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| T |
935786 |
ttccgttattcattactcatcgatcacag |
935814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 937361 - 937513
Alignment:
| Q |
18 |
aagataacatcaggaatggatttggtaacacttcgttgagtcacaggttgtcctgttctcgtagctaccatagctgctggaggtgccactattctggtga |
117 |
Q |
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| T |
937361 |
aagataacatcaggaatggctttcataacacttagttgaggcacagactgtcctgttctcttagctaccatagctgctggaggtgccactattccagtta |
937460 |
T |
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| Q |
118 |
tcatcatagaatcatctacattactcatatttacattcttaatcatgaaatca |
170 |
Q |
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| T |
937461 |
tcatcatagaatcatctactttgcttatatttacattcttaatcatgaaatca |
937513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 173
Target Start/End: Complemental strand, 7584356 - 7584254
Alignment:
| Q |
71 |
tgttctcgtagctaccatagctgctggaggtgccactattctggtgatcatcatagaatcatctacattactcatatttacattcttaatcatgaaatca |
170 |
Q |
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||||||| |||||| ||||||||||| ||||| ||||||| ||||||||||| |||||||||| ||||| ||||||| |||||||| |||||||||| |
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| T |
7584356 |
tgttctcttagctatcatagctgctgtaggtgatactattccattgatcatcatataatcatctactttactaatatttatattcttaaccatgaaatca |
7584257 |
T |
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| Q |
171 |
gtg |
173 |
Q |
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||| |
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| T |
7584256 |
gtg |
7584254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 7579371 - 7579323
Alignment:
| Q |
65 |
ttgtcctgttctcgtagcta-ccatagctgctggaggtgccactattct |
112 |
Q |
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||||| ||||||| |||||| ||||||||||||||||||||| |||||| |
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| T |
7579371 |
ttgtcttgttctcttagctaaccatagctgctggaggtgccaatattct |
7579323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 166
Target Start/End: Complemental strand, 38410409 - 38410308
Alignment:
| Q |
65 |
ttgtcctgttctcgtagctaccatagctgctggaggtgccactattctggtgatcatcatagaatcatctacattactcatatttacattcttaatcatg |
164 |
Q |
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|||||||||||| |||| || || |||||||| ||||||||||||| | ||| |||||||| |||||||| || | | ||| ||||||||| ||||| |
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| T |
38410409 |
ttgtcctgttcttttagccactatggctgctggtggtgccactattccagcgattatcatagattcatctactttgttgagattcacattcttattcatg |
38410310 |
T |
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| Q |
165 |
aa |
166 |
Q |
| |
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|| |
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|
| T |
38410309 |
aa |
38410308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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