View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3909_high_16 (Length: 260)

Name: NF3909_high_16
Description: NF3909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3909_high_16
NF3909_high_16
[»] chr4 (55 HSPs)
chr4 (1-241)||(27412706-27412945)
chr4 (56-191)||(27420500-27420635)
chr4 (60-241)||(27425854-27426035)
chr4 (144-244)||(27571662-27571762)
chr4 (61-242)||(27569967-27570148)
chr4 (144-244)||(27419072-27419172)
chr4 (60-241)||(27415663-27415845)
chr4 (87-241)||(27478827-27478981)
chr4 (87-241)||(27506740-27506894)
chr4 (95-242)||(27563298-27563445)
chr4 (87-201)||(27468271-27468385)
chr4 (134-244)||(27567294-27567404)
chr4 (143-244)||(27411456-27411557)
chr4 (92-191)||(27475528-27475627)
chr4 (87-241)||(27485886-27486041)
chr4 (92-191)||(27504014-27504113)
chr4 (61-183)||(27565869-27565991)
chr4 (103-242)||(27524565-27524704)
chr4 (134-242)||(27414295-27414403)
chr4 (87-201)||(27514973-27515087)
chr4 (58-241)||(27423264-27423448)
chr4 (104-242)||(27585729-27585867)
chr4 (143-244)||(27424514-27424615)
chr4 (60-191)||(27497239-27497370)
chr4 (92-191)||(27508944-27509043)
chr4 (143-244)||(27421931-27422036)
chr4 (134-218)||(27556370-27556454)
chr4 (134-200)||(27559231-27559297)
chr4 (100-224)||(27490019-27490143)
chr4 (133-196)||(17970386-17970449)
chr4 (143-241)||(27444794-27444892)
chr4 (145-230)||(27554362-27554447)
chr4 (143-241)||(27487025-27487123)
chr4 (143-187)||(27460574-27460618)
chr4 (143-187)||(27479997-27480041)
chr4 (144-187)||(27473988-27474031)
chr4 (143-194)||(27495625-27495676)
chr4 (133-224)||(27557548-27557639)
chr4 (108-180)||(27437237-27437309)
chr4 (143-187)||(27466917-27466961)
chr4 (134-194)||(27600642-27600702)
chr4 (133-200)||(27446230-27446297)
chr4 (143-194)||(27513776-27513827)
chr4 (143-218)||(27595450-27595525)
chr4 (143-241)||(27431148-27431246)
chr4 (145-191)||(27502809-27502855)
chr4 (145-191)||(27507815-27507861)
chr4 (108-170)||(27548961-27549023)
chr4 (144-241)||(27498457-27498554)
chr4 (143-200)||(27500338-27500395)
chr4 (143-196)||(27540094-27540147)
chr4 (143-187)||(27476783-27476827)
chr4 (143-187)||(27502135-27502179)
chr4 (143-187)||(27505702-27505746)
chr4 (143-187)||(27526112-27526156)
[»] chr5 (2 HSPs)
chr5 (92-241)||(1756706-1756855)
chr5 (10-191)||(1754780-1754955)
[»] chr3 (12 HSPs)
chr3 (130-191)||(50910052-50910113)
chr3 (133-190)||(48840702-48840759)
chr3 (137-221)||(38043965-38044049)
chr3 (64-191)||(38028687-38028814)
chr3 (64-191)||(55084878-55085005)
chr3 (136-201)||(38024868-38024933)
chr3 (136-201)||(38031320-38031385)
chr3 (91-188)||(50904740-50904837)
chr3 (64-191)||(38040002-38040129)
chr3 (137-201)||(50911863-50911927)
chr3 (58-191)||(38033690-38033827)
chr3 (64-191)||(38036714-38036841)
[»] chr8 (3 HSPs)
chr8 (133-221)||(21634605-21634693)
chr8 (64-191)||(21604675-21604802)
chr8 (135-201)||(21607288-21607354)
[»] chr2 (1 HSPs)
chr2 (133-196)||(3073656-3073719)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 55)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 27412945 - 27412706
Alignment:
Q  1 tagtcactttttcccatctttacaatttcattagatgcctagtttacnnnnnnnntgtctctactaaactatgtcagtttcttttggtgtcagattcata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  27412945 tagtcactttttcccatctttacaatttcattagatgcctagtttacaaaaaaa-tgtctctactaaactatgtcagtttcttttggtgtcagattcata 27412847  T
Q  101 gcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattg 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||    
T  27412846 gcccattcgagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttg 27412747  T
Q  201 atttagtaattcttgaaacgatggctggctcaaatatgata 241  Q
    | | | ||| ||||||||  |||| ||| |||| |||||||    
T  27412746 actcaataagtcttgaaataatggttggttcaagtatgata 27412706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 56 - 191
Target Start/End: Complemental strand, 27420635 - 27420500
Alignment:
Q  56 tgtctctactaaactatgtcagtttcttttggtgtcagattcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggt 155  Q
    ||||||||||||||||||||||  ||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  27420635 tgtctctactaaactatgtcagactcttttggtctcagattcatagcccattgaagcaagaagttatatgttgaaagacatcttccgtgcaaggaatggt 27420536  T
Q  156 gaggccacccattggatgatcatatccaaattcttc 191  Q
    |||||||||||| ||||||||||||||||| |||||    
T  27420535 gaggccacccatgggatgatcatatccaaactcttc 27420500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 60 - 241
Target Start/End: Complemental strand, 27426035 - 27425854
Alignment:
Q  60 tctactaaactatgtcagtttcttttggtgtcagattcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgagg 159  Q
    ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||    
T  27426035 tctactaaactatgtcagtctgttttggtgtcagattcataggccattcaagcgagatgtcatatgttgaaatacatcctcggtgcaaggaatggtgagg 27425936  T
Q  160 ccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgata 241  Q
    |||||||| ||||||||||||||||| ||||| ||  ||||| | | ||| |||||||| ||||| ||| |||| |||||||    
T  27425935 ccacccatgggatgatcatatccaaactcttcctcaaattgactcaataagtcttgaaatgatggttggttcaagtatgata 27425854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 144 - 244
Target Start/End: Complemental strand, 27571762 - 27571662
Alignment:
Q  144 gcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgatact 243  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571762 gcaaggaattgtgagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgatact 27571663  T
Q  244 g 244  Q
    |    
T  27571662 g 27571662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 61 - 242
Target Start/End: Original strand, 27569967 - 27570148
Alignment:
Q  61 ctactaaactatgtcagtttcttttggtgtcagattcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggc 160  Q
    |||||||||||||||||| |||| |||||| ||||||||| ||| |||| ||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  27569967 ctactaaactatgtcagtctcttctggtgttagattcatatcccgttcatgcgagatgttatatgttgaaagatatcttcggtgcaaggaatggtgaggc 27570066  T
Q  161 cacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgatac 242  Q
    ||||||| |||||||||||||| || ||||| || | |||| | || || |||||||| || || ||||| || ||||||||    
T  27570067 cacccatgggatgatcatatccgaactcttcctcagcttgactcagcaagtcttgaaatgaaggttggcttaagtatgatac 27570148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 27419072 - 27419172
Alignment:
Q  144 gcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgatact 243  Q
    ||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27419072 gcaaggaattgtaagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgatact 27419171  T
Q  244 g 244  Q
    |    
T  27419172 g 27419172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 60 - 241
Target Start/End: Complemental strand, 27415845 - 27415663
Alignment:
Q  60 tctactaaactatgtcagtttcttttg-gtgtcagattcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgag 158  Q
    ||||||||||||||||||| ||||||  |||| |||||||||  || ||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  27415845 tctactaaactatgtcagtctcttttttgtgttagattcatattccgttcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgag 27415746  T
Q  159 gccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgata 241  Q
    ||||||||| | ||||||||||||||| ||||| || | |||| | |  || |||||||||||||| ||| |||| |||||||    
T  27415745 gccacccatggaatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagtatgata 27415663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 87 - 241
Target Start/End: Original strand, 27478827 - 27478981
Alignment:
Q  87 gtgtcagattcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaat 186  Q
    |||| ||| ||||||||||||||||| ||| ||||||||||| || |||||||| | |||||||||||||||||||||||| ||||||||||||||||||    
T  27478827 gtgtaagaatcatagcccattcaagcaagaagttatatgttggaacacatcttcggagcaaggaatggtgaggccacccatgggatgatcatatccaaat 27478926  T
Q  187 tcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgata 241  Q
    |||||||| | ||||| ||| |||||||||||| |||| ||| |||| |||||||    
T  27478927 tcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagtatgata 27478981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 87 - 241
Target Start/End: Complemental strand, 27506894 - 27506740
Alignment:
Q  87 gtgtcagattcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaat 186  Q
    |||||||||| || || ||||||||| ||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||    
T  27506894 gtgtcagatttatggctcattcaagcaagaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaat 27506795  T
Q  187 tcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgata 241  Q
    |||||||| | ||||| ||| |||||||||||| |||| ||| | || |||||||    
T  27506794 tcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgata 27506740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 95 - 242
Target Start/End: Original strand, 27563298 - 27563445
Alignment:
Q  95 ttcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttc 194  Q
    |||||||| ||||||||||||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  27563298 ttcatagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttc 27563397  T
Q  195 tgattgatttagtaattcttgaaacgatggctggctcaaatatgatac 242  Q
     | |||| | || || ||||||||| |||  ||| |||| ||||||||    
T  27563398 ggcttgactcagcaaatcttgaaacaatgtttggttcaagtatgatac 27563445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 87 - 201
Target Start/End: Original strand, 27468271 - 27468385
Alignment:
Q  87 gtgtcagattcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaat 186  Q
    |||| |||||||||| |||||||||  |||  |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27468271 gtgtaagattcatagtccattcaaggaagaaattatatgttggaagacatcttccgtgcaaggaatggtgaggccacccatgggatgatcatatccaaat 27468370  T
Q  187 tcttcttctgattga 201  Q
    ||||| || ||||||    
T  27468371 tcttcctcggattga 27468385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 134 - 244
Target Start/End: Complemental strand, 27567404 - 27567294
Alignment:
Q  134 catcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaa 233  Q
    |||||||  |||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||    
T  27567404 catcttcgctgcaaggaattgtgagaccacccattggatgatcataaccaaattcttcttctgtttgatttagtaattcttgaaacgatggttggttcaa 27567305  T
Q  234 atatgatactg 244  Q
     ||||||||||    
T  27567304 gtatgatactg 27567294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 27411456 - 27411557
Alignment:
Q  143 tgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgatac 242  Q
    |||||||||| ||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| ||||||||    
T  27411456 tgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaacgatggttggttcaagtatgatac 27411555  T
Q  243 tg 244  Q
    ||    
T  27411556 tg 27411557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 92 - 191
Target Start/End: Original strand, 27475528 - 27475627
Alignment:
Q  92 agattcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttc 191  Q
    ||||||||||||||||||||| ||| ||||||||||| ||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||||    
T  27475528 agattcatagcccattcaagcaagaagttatatgttggaagacatcttcggagcaaggaatggtgaggccacccatgggatgatcatatccaaactcttc 27475627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 87 - 241
Target Start/End: Original strand, 27485886 - 27486041
Alignment:
Q  87 gtgtcagattcatagccca-ttcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaa 185  Q
    ||||||||||||| || || || |||| ||| ||||  |||||||||||  |||| |||||||||||||||||||||||||| |||||||||||||||||    
T  27485886 gtgtcagattcatggctcaatttaagcaagaagttacgtgttgaaagacgccttcagtgcaaggaatggtgaggccacccatgggatgatcatatccaaa 27485985  T
Q  186 ttcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgata 241  Q
    ||||||||| | ||||| ||| |||||||||||| |||| ||| |||| |||||||    
T  27485986 ttcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagtatgata 27486041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 92 - 191
Target Start/End: Complemental strand, 27504113 - 27504014
Alignment:
Q  92 agattcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttc 191  Q
    |||||||||| |||||||||| ||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27504113 agattcatagtccattcaagcaagaagttatgtgttggaagacatcttcggtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttc 27504014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 61 - 183
Target Start/End: Original strand, 27565869 - 27565991
Alignment:
Q  61 ctactaaactatgtcagtttcttttggtgtcagattcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggc 160  Q
    |||||||||||||||||| |  |||||||| || ||||||| |||||||||| ||| ||||||||||| |||||||||||    ||||||||||||||||    
T  27565869 ctactaaactatgtcagtctaatttggtgttaggttcatagtccattcaagcaagaagttatatgttggaagacatcttcgccacaaggaatggtgaggc 27565968  T
Q  161 cacccattggatgatcatatcca 183  Q
    |||||||||||||||||||||||    
T  27565969 cacccattggatgatcatatcca 27565991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 242
Target Start/End: Complemental strand, 27524704 - 27524565
Alignment:
Q  103 ccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattgat 202  Q
    ||||||||||  || ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| || | |||||    
T  27524704 ccattcaagcatgaagttatatgttggaagacatcttcggtgcacggaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgat 27524605  T
Q  203 ttagtaattcttgaaacgatggctggctcaaatatgatac 242  Q
    | |  || |||||||| || || ||| |||||||||||||    
T  27524604 tcaacaagtcttgaaatgaaggttggttcaaatatgatac 27524565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 134 - 242
Target Start/End: Original strand, 27414295 - 27414403
Alignment:
Q  134 catcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaa 233  Q
    |||||||  |||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| ||||    
T  27414295 catcttcactgcacggaattgtaagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaatgagggttggttcaa 27414394  T
Q  234 atatgatac 242  Q
     ||||||||    
T  27414395 gtatgatac 27414403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 27515087 - 27514973
Alignment:
Q  87 gtgtcagattcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaat 186  Q
    |||| |||||||||| |||||||||  |||  ||||||| || ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||    
T  27515087 gtgtaagattcatagtccattcaaggaagaaattatatgctggaagacatcttctgtacaaggaatggtgaggccacccatgggatgatcatatccaaat 27514988  T
Q  187 tcttcttctgattga 201  Q
    ||||| || ||||||    
T  27514987 tcttcctcggattga 27514973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 27423448 - 27423264
Alignment:
Q  58 tctctactaaa-ctatgtcagtttcttttggtgtcagattcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtg 156  Q
    ||||||||||| ||| || ||| | |||||||||  ||||||||| ||||||||| |||| ||||||||||| || ||||||||||||||||||| ||||    
T  27423448 tctctactaaaactacgttagtctattttggtgtttgattcatagtccattcaagtgagaagttatatgttggaaaacatcttccgtgcaaggaacggtg 27423349  T
Q  157 aggccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgata 241  Q
    ||||||||||| |||||||  || ||||| ||||| || | |||| | |  ||||||||||| || || ||| |||| |||||||    
T  27423348 aggccacccatgggatgattgtaaccaaactcttcctcggcttgactcaacaattcttgaaatgaaggttggttcaagtatgata 27423264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 104 - 242
Target Start/End: Complemental strand, 27585867 - 27585729
Alignment:
Q  104 cattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattgatt 203  Q
    ||||||||||| | ||||||||||  ||| ||||||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||| | |||| |    
T  27585867 cattcaagcgataagttatatgtttgaaggcatcttctgtgcaaggaatggtgagacctcccattggatgatcatatccaaactcttcttcggcttgact 27585768  T
Q  204 tagtaattcttgaaacgatggctggctcaaatatgatac 242  Q
     |  || ||||||||| |||| ||| |||| ||||||||    
T  27585767 catcaaatcttgaaacaatggttggttcaagtatgatac 27585729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 27424514 - 27424615
Alignment:
Q  143 tgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgatac 242  Q
    |||| |||||||| || |||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| || || ||| |||| ||||||||    
T  27424514 tgcacggaatggtaagaccacccattggatgatcatatccatattcttcttcagattgatttagcaattcttgaaatgaaggttggttcaagtatgatac 27424613  T
Q  243 tg 244  Q
    ||    
T  27424614 tg 27424615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 60 - 191
Target Start/End: Original strand, 27497239 - 27497370
Alignment:
Q  60 tctactaaactatgtcagtttcttttggtgtcagattcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgagg 159  Q
    |||||||||||| |||||| |||||    || | ||| ||||||||||||||||||| |||||  |||| ||||||| ||| ||||||||||||||||||    
T  27497239 tctactaaactacgtcagtctctttccacgtgaaatttatagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatggtgagg 27497338  T
Q  160 ccacccattggatgatcatatccaaattcttc 191  Q
    |||||  | ||||||||||||||||| |||||    
T  27497339 ccacctgtgggatgatcatatccaaactcttc 27497370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 191
Target Start/End: Complemental strand, 27509043 - 27508944
Alignment:
Q  92 agattcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttc 191  Q
    |||||||||| ||||| |||| ||| ||||||||||| || |||||||| | ||| |||||||||||||||||| ||||||||||||||||||| |||||    
T  27509043 agattcatagtccattgaagcaagaagttatatgttggaacacatcttcggagcatggaatggtgaggccacccgttggatgatcatatccaaactcttc 27508944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 27421931 - 27422036
Alignment:
Q  143 tgcaaggaatggtgaggccacccattggatgatcatatcc----aaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatg 238  Q
    |||||||||| ||||| |||||| |||||||||| |||||    |||||||||||||| |||||||||||||||||||||  |||| ||| |||| ||||    
T  27421931 tgcaaggaattgtgagaccacccgttggatgatcgtatccatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatg 27422030  T
Q  239 atactg 244  Q
    ||||||    
T  27422031 atactg 27422036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 27556370 - 27556454
Alignment:
Q  134 catcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaa 218  Q
    |||||||  |||| ||||| ||||| |||||||| | |||||||||||||||||||||||||| ||||| |||||||||||||||    
T  27556370 catcttcactgcatggaattgtgagaccacccatagaatgatcatatccaaattcttcttctgcttgatgtagtaattcttgaaa 27556454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 27559231 - 27559297
Alignment:
Q  134 catcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattg 200  Q
    |||||||  |||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  27559231 catcttcactgcaaggaattgtgagaccacccattggatgatcatatccaaactcttcttctgattg 27559297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 224
Target Start/End: Complemental strand, 27490143 - 27490019
Alignment:
Q  100 agcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgatt 199  Q
    |||||||| ||||||||  |||| | ||| ||| |||||||  ||  ||||||||||||||||||||||||||||||||||||||| ||||| || | ||    
T  27490143 agcccattaaagcgagaaattatgtattggaagtcatcttcgttgacaggaatggtgaggccacccattggatgatcatatccaaactcttcctcggctt 27490044  T
Q  200 gatttagtaattcttgaaacgatgg 224  Q
    |||| |  || |||||||| |||||    
T  27490043 gattcaacaaatcttgaaatgatgg 27490019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 17970449 - 17970386
Alignment:
Q  133 acatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctg 196  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||    
T  17970449 acatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctg 17970386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 27444794 - 27444892
Alignment:
Q  143 tgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgata 241  Q
    |||||||||| ||||| |||||||||||||| |||||||| |||| ||| || | |||||| | |||||||||||| ||||  |||||||| |||||||    
T  27444794 tgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgata 27444892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 27554447 - 27554362
Alignment:
Q  145 caaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggct 230  Q
    |||||||| ||||| | |||| ||||||||||||||||||||| ||| || | |||||| || ||||||||||||||||| |||||    
T  27554447 caaggaattgtgagactacccgttggatgatcatatccaaattgttcctcagcttgattcagcaattcttgaaacgatggttggct 27554362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 27487123 - 27487025
Alignment:
Q  143 tgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgata 241  Q
    |||||||||| || || ||||||||||||||||||||| |||||| |||||| | ||| || |  ||||||||||||||||| ||| | || |||||||    
T  27487123 tgcaaggaatagtaagaccacccattggatgatcatattcaaattgttcttcagcttggttcaacaattcttgaaacgatggttggtttaagtatgata 27487025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 27460618 - 27460574
Alignment:
Q  143 tgcaaggaatggtgaggccacccattggatgatcatatccaaatt 187  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||    
T  27460618 tgcaaggaatggtgagaccacccattggatgatcatattcaaatt 27460574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 27480041 - 27479997
Alignment:
Q  143 tgcaaggaatggtgaggccacccattggatgatcatatccaaatt 187  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||    
T  27480041 tgcaaggaatggtgagaccacccattggatgatcatattcaaatt 27479997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 27474031 - 27473988
Alignment:
Q  144 gcaaggaatggtgaggccacccattggatgatcatatccaaatt 187  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||    
T  27474031 gcaaggaatggtgagaccacccattggatgatcatattcaaatt 27473988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 27495676 - 27495625
Alignment:
Q  143 tgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttc 194  Q
    |||||||||||||||| |||||||||||||||| | ||||||| ||||||||    
T  27495676 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttc 27495625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 27557639 - 27557548
Alignment:
Q  133 acatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatgg 224  Q
    ||||||||  |||| ||||| ||||| ||||||||||||||| ||||| |||||| ||| || | |||||| || ||||||||||| |||||    
T  27557639 acatcttctctgcatggaatagtgagaccacccattggatgaacatattcaaattgttcctcagcttgattcagcaattcttgaaatgatgg 27557548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 27437309 - 27437237
Alignment:
Q  108 caagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatat 180  Q
    |||||||||  |||| || || ||||||||||| ||||||||||| |  |||||| |||||||||||||||||    
T  27437309 caagcgagacattatgtgctggaagacatcttcggtgcaaggaataggaaggccaaccattggatgatcatat 27437237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 27466961 - 27466917
Alignment:
Q  143 tgcaaggaatggtgaggccacccattggatgatcatatccaaatt 187  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||||    
T  27466961 tgcaaggaatagtgagaccacccattggatgatcatattcaaatt 27466917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 27600702 - 27600642
Alignment:
Q  134 catcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttc 194  Q
    |||||||  |||||||||| ||||| ||||||||||||||||  || ||||||||||||||    
T  27600702 catcttctttgcaaggaattgtgagaccacccattggatgattgtaaccaaattcttcttc 27600642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 27446297 - 27446230
Alignment:
Q  133 acatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattg 200  Q
    ||||||||  |||||||||| | ||| ||| ||||| ||||||||||| |||| ||||||||||||||    
T  27446297 acatcttcactgcaaggaatcgagagaccatccattcgatgatcatattcaaactcttcttctgattg 27446230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 27513776 - 27513827
Alignment:
Q  143 tgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttc 194  Q
    |||||||||| ||||| ||||||||||||||||||||| || ||| ||||||    
T  27513776 tgcaaggaatagtgagaccacccattggatgatcatattcatattgttcttc 27513827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 27595525 - 27595450
Alignment:
Q  143 tgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaa 218  Q
    |||||||||| || || |||||||| |||||||   ||||||| |||| ||||| |||| ||||||||||||||||    
T  27595525 tgcaaggaattgtaagaccacccatgggatgattgaatccaaactctttttctgcttgacttagtaattcttgaaa 27595450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 27431148 - 27431246
Alignment:
Q  143 tgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgata 241  Q
    |||||||||| ||||| |||||  ||||||| ||||||||||||| ||| || | |||||| |  ||||||||||| || || ||| |||| |||||||    
T  27431148 tgcaaggaattgtgagaccaccggttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgata 27431246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 27502809 - 27502855
Alignment:
Q  145 caaggaatggtgaggccacccattggatgatcatatccaaattcttc 191  Q
    |||||||| || || |||||||||||||| |||||||||||||||||    
T  27502809 caaggaatagtaagaccacccattggatggtcatatccaaattcttc 27502855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 27507815 - 27507861
Alignment:
Q  145 caaggaatggtgaggccacccattggatgatcatatccaaattcttc 191  Q
    |||||||| || || |||||||||||||| |||||||||||||||||    
T  27507815 caaggaattgtaagaccacccattggatggtcatatccaaattcttc 27507861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 27548961 - 27549023
Alignment:
Q  108 caagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattgg 170  Q
    ||||||||| ||||| || || ||||||||||| ||||||| ||| ||||||||| |||||||    
T  27548961 caagcgagacgttatgtgctggaagacatcttcggtgcaagaaatagtgaggccaaccattgg 27549023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 27498554 - 27498457
Alignment:
Q  144 gcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgata 241  Q
    ||||||||| ||||| ||||||||||||||||||||| | |||| ||| || | ||| || |  || ||||| |||||||| ||| |||| |||||||    
T  27498554 gcaaggaatagtgagaccacccattggatgatcatattcgaattgttcctcggcttggttcaacaagtcttggaacgatggttggttcaagtatgata 27498457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 27500338 - 27500395
Alignment:
Q  143 tgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattg 200  Q
    |||||||||| |||| ||||||||||||||| |||||||| || | |||||| |||||    
T  27500338 tgcaaggaatagtgatgccacccattggatggtcatatccgaactgttcttcagattg 27500395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 27540147 - 27540094
Alignment:
Q  143 tgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctg 196  Q
    ||||||||||||| || ||||||||||||||||  || ||||||||||| ||||    
T  27540147 tgcaaggaatggttagtccacccattggatgatggtacccaaattcttcctctg 27540094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 27476827 - 27476783
Alignment:
Q  143 tgcaaggaatggtgaggccacccattggatgatcatatccaaatt 187  Q
    |||||||||| || || ||||||||||||||||||||| ||||||    
T  27476827 tgcaaggaatagttagaccacccattggatgatcatattcaaatt 27476783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 27502135 - 27502179
Alignment:
Q  143 tgcaaggaatggtgaggccacccattggatgatcatatccaaatt 187  Q
    |||||||||| || || ||||||||||||||||||||| ||||||    
T  27502135 tgcaaggaatagttagaccacccattggatgatcatattcaaatt 27502179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 27505702 - 27505746
Alignment:
Q  143 tgcaaggaatggtgaggccacccattggatgatcatatccaaatt 187  Q
    |||||||||| ||||| |||||||||||||| |||||| ||||||    
T  27505702 tgcaaggaatagtgagaccacccattggatggtcatattcaaatt 27505746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 27526112 - 27526156
Alignment:
Q  143 tgcaaggaatggtgaggccacccattggatgatcatatccaaatt 187  Q
    |||||||||| ||||| |||||| |||||||||||||| ||||||    
T  27526112 tgcaaggaatagtgagaccacccgttggatgatcatattcaaatt 27526156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 92 - 241
Target Start/End: Original strand, 1756706 - 1756855
Alignment:
Q  92 agattcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttc 191  Q
    ||||||||||||||||||||| ||| || |||||||| ||| ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||    
T  1756706 agattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttc 1756805  T
Q  192 ttctgattgatttagtaattcttgaaacgatggctggctcaaatatgata 241  Q
    ||| | |||| | |  || | |||||||||||| ||| |||| |||||||    
T  1756806 ttcagcttgactcaacaagtattgaaacgatggttggttcaagtatgata 1756855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 1754955 - 1754780
Alignment:
Q  10 tttcccatctttacaatttcattagatgcctagtttacnnnnnnnntgtctctactaaactatgtcagtttcttttggtgtcagattcatagcccattca 109  Q
    ||||||||||||||||||| || |||| ||||||||||        ||||||  ||||||||||||| | ||||||| | | | ||| |||||||||| |    
T  1754955 tttcccatctttacaatttgataagatacctagtttacaaaaa---tgtctc--ctaaactatgtcactctcttttg-tatgaaatttatagcccattta 1754862  T
Q  110 agcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttc 191  Q
    ||| ||| ||||||| ||  ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  1754861 agctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttc 1754780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 50910113 - 50910052
Alignment:
Q  130 aagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttc 191  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  50910113 aagacatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattcttc 50910052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 48840702 - 48840759
Alignment:
Q  133 acatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattctt 190  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48840702 acatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattctt 48840759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 38044049 - 38043965
Alignment:
Q  137 cttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacga 221  Q
    |||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| |||| | || || |||||||||||    
T  38044049 cttcggtgcaaggaattgtgaggccgcccattggatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacga 38043965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 191
Target Start/End: Original strand, 38028687 - 38028814
Alignment:
Q  64 ctaaactatgtcagtttcttttggtgtcagattcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccac 163  Q
    |||| |||||||||| || ||| |||| ||||| |||||||||| ||| |||| || |||||    || || ||||| ||||||||||| |||||||| |    
T  38028687 ctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgc 38028786  T
Q  164 ccattggatgatcatatccaaattcttc 191  Q
    |||||||||| |||||||||||||||||    
T  38028787 ccattggatggtcatatccaaattcttc 38028814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 191
Target Start/End: Complemental strand, 55085005 - 55084878
Alignment:
Q  64 ctaaactatgtcagtttcttttggtgtcagattcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccac 163  Q
    |||| |||||||| | |||||  |||| ||||| ||||  |||| |||||||| || |||||    || |||||||| ||||||||||| ||||||||||    
T  55085005 ctaatctatgtcaatctctttcagtgtaagatttatagttcattgaagcgagaagtaatatgaaagaaaacatcttctgtgcaaggaattgtgaggccac 55084906  T
Q  164 ccattggatgatcatatccaaattcttc 191  Q
    ||||||||||||| ||||||||||||||    
T  55084905 ccattggatgatcgtatccaaattcttc 55084878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 38024868 - 38024933
Alignment:
Q  136 tcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattga 201  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||    
T  38024868 tcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttga 38024933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 38031320 - 38031385
Alignment:
Q  136 tcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattga 201  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||    
T  38031320 tcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttga 38031385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 188
Target Start/End: Original strand, 50904740 - 50904837
Alignment:
Q  91 cagattcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattc 188  Q
    |||||| | |||||||| |||||||| || |||||   ||| || |||||  |||||||||||||||||||||||||||||||||||||||| |||||    
T  50904740 cagatttacagcccattgaagcgagaagtgatatgcaaaaaaacctcttctctgcaaggaatggtgaggccacccattggatgatcatatccgaattc 50904837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 191
Target Start/End: Original strand, 38040002 - 38040129
Alignment:
Q  64 ctaaactatgtcagtttcttttggtgtcagattcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccac 163  Q
    |||| |||||||||| || ||| |||| ||||| |||||||||| ||| |||| || |||||    || || ||||| ||||||||||| |||||||| |    
T  38040002 ctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgc 38040101  T
Q  164 ccattggatgatcatatccaaattcttc 191  Q
    |||||||||| |||||||| ||||||||    
T  38040102 ccattggatggtcatatccgaattcttc 38040129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 50911863 - 50911927
Alignment:
Q  137 cttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattga 201  Q
    |||| ||||||||||| || |||||||||||||| |||||||||||||||||||| |||| ||||    
T  50911863 cttctgtgcaaggaattgttaggccacccattgggtgatcatatccaaattcttcctctgcttga 50911927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 191
Target Start/End: Original strand, 38033690 - 38033827
Alignment:
Q  58 tctctactaaactatgtcagtttcttttggtgtcagattcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtga 157  Q
    ||||| |||| |||||||||| || ||| |||| ||||| |||||||||| |||||||| || |||||    || |||||||| ||||| ||||| ||||    
T  38033690 tctctgctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagcgagaagtaatatgcaagaaaacatcttctgtgcagggaattgtga 38033789  T
Q  158 ggccacccatt----ggatgatcatatccaaattcttc 191  Q
     ||| ||||||    ||||| |||||||||||||||||    
T  38033790 tgccgcccattaattggatggtcatatccaaattcttc 38033827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 191
Target Start/End: Original strand, 38036714 - 38036841
Alignment:
Q  64 ctaaactatgtcagtttcttttggtgtcagattcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccac 163  Q
    |||| |||||||||| || | | |||| ||||| |||||||||| ||| |||| || |||||    || || | ||| ||||||||||| |||||||| |    
T  38036714 ctaatctatgtcagtctcctatagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtattctgtgcaaggaattgtgaggccgc 38036813  T
Q  164 ccattggatgatcatatccaaattcttc 191  Q
    |||||||||| |||||||| ||||||||    
T  38036814 ccattggatggtcatatccgaattcttc 38036841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 21634693 - 21634605
Alignment:
Q  133 acatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacga 221  Q
    |||||||| ||||||||||| |||| ||| |||||| |||||||||||||||||||||| |||| |||| | || || |||||||||||    
T  21634693 acatcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacga 21634605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 191
Target Start/End: Original strand, 21604675 - 21604802
Alignment:
Q  64 ctaaactatgtcagtttcttttggtgtcagattcatagcccattcaagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccac 163  Q
    |||| |||||||||| || ||| |||| ||||| |||||||||| ||| |||| || |||||    || || ||||| ||||||||||| |||||||| |    
T  21604675 ctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgc 21604774  T
Q  164 ccattggatgatcatatccaaattcttc 191  Q
    |||||||||| |||||||| ||||||||    
T  21604775 ccattggatggtcatatcctaattcttc 21604802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 21607288 - 21607354
Alignment:
Q  135 atcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctgattga 201  Q
    |||||| ||||||||||  ||||||||||||||||| |||||||||||||||||||| |||| ||||    
T  21607288 atcttctgtgcaaggaaccgtgaggccacccattgggtgatcatatccaaattcttcctctgcttga 21607354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 3073719 - 3073656
Alignment:
Q  133 acatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaattcttcttctg 196  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||    
T  3073719 acatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctg 3073656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University