View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3909_high_20 (Length: 206)
Name: NF3909_high_20
Description: NF3909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3909_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 24 - 191
Target Start/End: Complemental strand, 8176408 - 8176235
Alignment:
| Q |
24 |
tgatgtgggttgaggcccattccgaaacaattgccccaagcccttattgtctttatgacataagaagcttcagaaggagacaaccttgataacaacttat |
123 |
Q |
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| T |
8176408 |
tgatgtgggttgaggcccattccgaaacaattgccccaagcccttattgtctttatgacataagaagcttcagaaggagacaagcttgataacaacttat |
8176309 |
T |
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| Q |
124 |
gactttgggcagagaatagttgagacatgtgcacctccgtcttt------atgatgcgttttgatattcctttg |
191 |
Q |
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| T |
8176308 |
gactttgggcagagcatagttgagaaaagtgcacctccgtgtttatggagatgatgcgttttgatattcctttg |
8176235 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 11748480 - 11748516
Alignment:
| Q |
57 |
ccccaagcccttattgtctttatgacataagaagctt |
93 |
Q |
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| T |
11748480 |
ccccaagcccttatcgtctttatgacgtaagaagctt |
11748516 |
T |
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