View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3909_high_8 (Length: 408)
Name: NF3909_high_8
Description: NF3909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3909_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 133 - 400
Target Start/End: Original strand, 41816186 - 41816453
Alignment:
| Q |
133 |
attcaggtaaatgtgattattttaatggtgattgggtaccaaacccattgggtccaatttatacaaatgaaacatgtgacctgattgaatcacatcaaaa |
232 |
Q |
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| T |
41816186 |
attcaggtaaatgtgattattttaatggtgattgggtaccaaacccattgggtccaatttatacaaatgaaacatgtgacctgattgaatcacatcaaaa |
41816285 |
T |
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| Q |
233 |
ttgcatgaaaaatgggagaccagacagagaatttttgcactggaagtgggcacctacagattgtgagttacctatttttgatcctcaaagatttctcaac |
332 |
Q |
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| T |
41816286 |
ttgcatgaaaaatgggagaccagacagagaatttttgtactggaagtgggcacctacagattgtgagttacctatttttgatcctcaaaggtttctcaac |
41816385 |
T |
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| Q |
333 |
ttgatgcgtggtaaagtgtgggcacttattggtgattctatttctcgtaaccatgttcagcctttgct |
400 |
Q |
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| T |
41816386 |
ttgatgcgtggtaaagtgtgggcacttattggtgattctatttctcgtaaccatgttcagtctttgct |
41816453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 41816068 - 41816158
Alignment:
| Q |
17 |
actgtttaattcctatgctgggtcgttccaatgattcaattagtcggttttgaatcagataccgagtttccaaaacaagttaaagttggga |
107 |
Q |
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| T |
41816068 |
actgtttaattcctattctgggtcgttccaatgattcaattagtccgttttgaatcaactaccgtgtttccaaaacaagttaaagttggga |
41816158 |
T |
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