View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3909_low_1 (Length: 576)
Name: NF3909_low_1
Description: NF3909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3909_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 35395841 - 35395283
Alignment:
| Q |
1 |
tattaaactaaacacaaacttcgtatttctggtttacgatatttcagttacctctgtctttccgctgagaagaaacaccctcaatggcagtaaagatatc |
100 |
Q |
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| T |
35395841 |
tattaaactaaacacaaacttcgtatttctggtttacgatatttcagttacctctgtctttccgctgagaagaaacaccctcaatggcagtaaagatatc |
35395742 |
T |
|
| Q |
101 |
tggtgtaaatatatacacaccactgtttataaggtcactaacctgcaatcaggtaagcttgcagcataagacagtaaacagcagcagggaaaagagaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35395741 |
tggtgtaaatatatacacaccactgtttataaggtcactaacctgcaatcaggtaagcttgcagcataagacagtaaacagcagcagggaaaagagaaat |
35395642 |
T |
|
| Q |
201 |
gattttcaaattttagttcagcaattcaagacataacataagcaagcacagaaacatacaaaagtttcaggtttctctgtgtagtgcaagagttcattgg |
300 |
Q |
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| T |
35395641 |
gattttcaaattttagttcagcaattcaagacataacataagcaagcacagaaacatacaaaagtttcaggtttctctgtgtagtgcaagagttcattgg |
35395542 |
T |
|
| Q |
301 |
tgacaggatcagctaccaattccccaaattcgctggctgactccggagaaaccttcaaaaagaggagaaaaggatcacacaaattggacactattcagaa |
400 |
Q |
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| T |
35395541 |
tgacaggatcagccaccaattccccaaattcgctggctgactccggagaaaccttcaaaatgaggagaaaaggatcacacaaattggacactattcagaa |
35395442 |
T |
|
| Q |
401 |
aaatgtcactattaaaacacaatatgtgcccaatttctaaccttgacaacaagtattgttcccatgccgccatgttttttgtgagcatctgtaatcaagt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35395441 |
aaatgtcactattaaaacacaatatgtgcccaatttctaaccttgacaacaagtattgttcccatgccgccatgttttttgtgagcatctgtaatcaagt |
35395342 |
T |
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| Q |
501 |
gcatagcatacacaggaaaatcaagaattaattgtatcagcagtgataaatacagttaa |
559 |
Q |
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| T |
35395341 |
gcatagcatacacaggaaaatcaagaattaattgtatcagcagtgataaatacagttaa |
35395283 |
T |
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