View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3909_low_12 (Length: 325)

Name: NF3909_low_12
Description: NF3909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3909_low_12
NF3909_low_12
[»] chr5 (21 HSPs)
chr5 (11-188)||(16642196-16642372)
chr5 (11-176)||(27015205-27015370)
chr5 (11-176)||(5057721-5057885)
chr5 (21-176)||(40146944-40147099)
chr5 (11-176)||(213141-213307)
chr5 (12-176)||(28277989-28278154)
chr5 (11-176)||(38746678-38746843)
chr5 (12-165)||(316439-316593)
chr5 (21-153)||(35615854-35615987)
chr5 (11-176)||(30802614-30802779)
chr5 (11-173)||(27637949-27638109)
chr5 (38-172)||(10055040-10055175)
chr5 (21-172)||(30792923-30793073)
chr5 (44-157)||(33906377-33906491)
chr5 (11-162)||(4160307-4160458)
chr5 (12-139)||(14689774-14689902)
chr5 (260-305)||(16641479-16641524)
chr5 (11-61)||(33906577-33906627)
chr5 (260-305)||(16642079-16642124)
chr5 (85-173)||(21205985-21206074)
chr5 (108-165)||(10700982-10701039)
[»] chr4 (39 HSPs)
chr4 (11-176)||(8665080-8665245)
chr4 (12-176)||(38811409-38811573)
chr4 (11-176)||(27417281-27417446)
chr4 (9-176)||(2209379-2209546)
chr4 (11-176)||(6655629-6655794)
chr4 (11-176)||(50263028-50263193)
chr4 (11-176)||(33989535-33989700)
chr4 (21-176)||(40630667-40630822)
chr4 (11-176)||(55085695-55085861)
chr4 (11-173)||(12073066-12073227)
chr4 (11-155)||(46703174-46703318)
chr4 (11-173)||(54882693-54882855)
chr4 (15-176)||(26363942-26364103)
chr4 (11-176)||(35662115-35662280)
chr4 (11-175)||(46569877-46570041)
chr4 (11-122)||(8653273-8653384)
chr4 (11-172)||(41964089-41964249)
chr4 (11-176)||(379051-379217)
chr4 (11-176)||(50674176-50674341)
chr4 (61-176)||(8647860-8647976)
chr4 (21-156)||(33089582-33089717)
chr4 (38-156)||(3785790-3785909)
chr4 (11-111)||(10071558-10071657)
chr4 (11-137)||(35370705-35370833)
chr4 (11-165)||(22883093-22883248)
chr4 (11-165)||(22934757-22934912)
chr4 (34-131)||(10071966-10072065)
chr4 (34-137)||(35369807-35369912)
chr4 (11-172)||(47514835-47514997)
chr4 (11-156)||(26699795-26699943)
chr4 (12-136)||(6719259-6719384)
chr4 (65-165)||(25723557-25723658)
chr4 (11-176)||(34112284-34112450)
chr4 (38-94)||(32091270-32091326)
chr4 (52-141)||(43135810-43135899)
chr4 (261-305)||(15115757-15115801)
chr4 (11-105)||(22629290-22629384)
chr4 (42-154)||(41961110-41961224)
chr4 (260-305)||(15010576-15010621)
[»] chr7 (27 HSPs)
chr7 (11-176)||(4512720-4512884)
chr7 (11-176)||(22269647-22269811)
chr7 (14-176)||(3258671-3258834)
chr7 (11-173)||(6431644-6431806)
chr7 (11-176)||(34311046-34311212)
chr7 (11-142)||(32358199-32358331)
chr7 (11-176)||(29608414-29608574)
chr7 (11-175)||(2389955-2390119)
chr7 (11-176)||(4509036-4509192)
chr7 (11-176)||(4510878-4511034)
chr7 (11-176)||(2361301-2361466)
chr7 (11-172)||(22328732-22328895)
chr7 (11-151)||(5116307-5116448)
chr7 (11-176)||(6360242-6360407)
chr7 (11-157)||(48599683-48599819)
chr7 (11-79)||(30814438-30814505)
chr7 (115-176)||(8359648-8359708)
chr7 (47-153)||(22552791-22552897)
chr7 (260-305)||(16459160-16459205)
chr7 (260-305)||(14260432-14260477)
chr7 (260-309)||(32304338-32304387)
chr7 (260-305)||(241235-241280)
chr7 (260-305)||(1494707-1494752)
chr7 (260-305)||(11068953-11068998)
chr7 (260-305)||(20620899-20620944)
chr7 (96-148)||(23794191-23794244)
chr7 (260-309)||(32159583-32159632)
[»] chr2 (14 HSPs)
chr2 (11-176)||(45726603-45726767)
chr2 (11-176)||(42288440-42288604)
chr2 (11-176)||(1632062-1632227)
chr2 (11-176)||(35447214-35447379)
chr2 (11-171)||(17450264-17450423)
chr2 (11-172)||(33647841-33648004)
chr2 (11-165)||(42261950-42262105)
chr2 (21-176)||(24397739-24397896)
chr2 (12-176)||(7450975-7451138)
chr2 (11-165)||(30218374-30218529)
chr2 (11-142)||(40935543-40935675)
chr2 (85-142)||(24197645-24197703)
chr2 (260-305)||(23064569-23064614)
chr2 (114-171)||(16676021-16676078)
[»] scaffold0286 (1 HSPs)
scaffold0286 (11-176)||(11231-11396)
[»] chr3 (28 HSPs)
chr3 (11-176)||(43402120-43402285)
chr3 (14-176)||(6095929-6096091)
chr3 (11-176)||(47303925-47304090)
chr3 (11-176)||(49199801-49199966)
chr3 (11-176)||(30235798-30235963)
chr3 (11-176)||(46860143-46860309)
chr3 (11-176)||(41819852-41820016)
chr3 (11-176)||(34490886-34491051)
chr3 (11-176)||(43404063-43404228)
chr3 (11-176)||(54593377-54593543)
chr3 (11-176)||(28074290-28074454)
chr3 (11-176)||(36018523-36018689)
chr3 (11-176)||(40913011-40913177)
chr3 (11-176)||(4569624-4569789)
chr3 (11-176)||(55302295-55302460)
chr3 (11-176)||(5434207-5434374)
chr3 (11-157)||(26323861-26324008)
chr3 (11-157)||(34795542-34795689)
chr3 (15-165)||(39127236-39127386)
chr3 (35-175)||(1683184-1683325)
chr3 (11-157)||(35139054-35139209)
chr3 (11-156)||(36796079-36796229)
chr3 (260-305)||(15065281-15065326)
chr3 (260-305)||(43888266-43888311)
chr3 (263-305)||(18698522-18698564)
chr3 (260-305)||(22758208-22758253)
chr3 (260-309)||(35960463-35960512)
chr3 (11-47)||(31340501-31340536)
[»] scaffold0466 (1 HSPs)
scaffold0466 (11-176)||(7001-7166)
[»] chr1 (29 HSPs)
chr1 (11-176)||(7482560-7482726)
chr1 (11-176)||(29135921-29136085)
chr1 (11-176)||(37167970-37168135)
chr1 (21-176)||(42298305-42298460)
chr1 (11-176)||(28242061-28242226)
chr1 (11-173)||(34603249-34603411)
chr1 (11-173)||(34602672-34602834)
chr1 (11-176)||(47255669-47255829)
chr1 (11-176)||(11348371-11348536)
chr1 (11-176)||(13547419-13547584)
chr1 (11-176)||(13549330-13549495)
chr1 (11-176)||(37033403-37033564)
chr1 (11-165)||(193285-193438)
chr1 (11-176)||(37879241-37879406)
chr1 (11-165)||(41135493-41135648)
chr1 (11-176)||(47114845-47115009)
chr1 (11-176)||(19754164-19754329)
chr1 (11-176)||(19752359-19752523)
chr1 (21-157)||(9109750-9109887)
chr1 (11-170)||(6808119-6808279)
chr1 (43-111)||(22079039-22079107)
chr1 (34-139)||(16216860-16216966)
chr1 (34-107)||(31928208-31928281)
chr1 (11-165)||(6068290-6068445)
chr1 (50-151)||(3331255-3331357)
chr1 (42-171)||(28318094-28318225)
chr1 (120-176)||(31926036-31926091)
chr1 (97-142)||(12318844-12318890)
chr1 (98-170)||(38747052-38747124)
[»] chr8 (17 HSPs)
chr8 (11-176)||(42435321-42435486)
chr8 (11-172)||(2999854-3000016)
chr8 (11-157)||(22976207-22976353)
chr8 (11-163)||(11383659-11383811)
chr8 (11-123)||(4283219-4283331)
chr8 (11-176)||(44353468-44353630)
chr8 (36-173)||(40328476-40328614)
chr8 (11-171)||(3846153-3846313)
chr8 (20-176)||(40221427-40221583)
chr8 (11-157)||(40585397-40585545)
chr8 (11-157)||(3817681-3817829)
chr8 (11-108)||(20686456-20686552)
chr8 (24-139)||(40535538-40535652)
chr8 (49-151)||(10020150-10020254)
chr8 (85-152)||(10101513-10101581)
chr8 (85-152)||(28461307-28461375)
chr8 (269-309)||(19141378-19141418)
[»] chr6 (13 HSPs)
chr6 (11-176)||(3809038-3809204)
chr6 (11-176)||(5043301-5043465)
chr6 (11-170)||(2973275-2973435)
chr6 (37-179)||(603407-603550)
chr6 (12-176)||(17762661-17762827)
chr6 (19-176)||(21593347-21593504)
chr6 (11-165)||(25072858-25073012)
chr6 (11-176)||(26800443-26800608)
chr6 (11-157)||(22425174-22425321)
chr6 (11-171)||(26830459-26830619)
chr6 (46-176)||(17757789-17757922)
chr6 (260-305)||(15703587-15703632)
chr6 (260-305)||(19771736-19771781)
[»] scaffold0014 (1 HSPs)
scaffold0014 (11-176)||(80613-80778)
[»] scaffold0002 (1 HSPs)
scaffold0002 (11-165)||(490785-490940)
[»] scaffold0197 (1 HSPs)
scaffold0197 (11-152)||(1759-1901)
[»] scaffold0176 (1 HSPs)
scaffold0176 (34-176)||(18331-18474)
[»] scaffold0292 (1 HSPs)
scaffold0292 (260-305)||(8507-8552)
[»] scaffold0096 (1 HSPs)
scaffold0096 (260-305)||(24109-24154)
[»] scaffold0018 (1 HSPs)
scaffold0018 (260-305)||(22741-22786)
[»] scaffold0011 (1 HSPs)
scaffold0011 (260-303)||(129203-129246)
[»] scaffold0431 (1 HSPs)
scaffold0431 (260-305)||(14248-14293)
[»] scaffold0126 (1 HSPs)
scaffold0126 (260-305)||(7308-7353)
[»] scaffold0077 (1 HSPs)
scaffold0077 (260-305)||(35920-35965)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 16642372 - 16642196
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggg 110  Q
    |||||||||| ||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  16642372 caaaggagagcacttttagggtatttagatactaaaggttgatggtctttgggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 16642274  T
Q  111 gctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggagtgtgtaatgccc 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16642273 gctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacacatgagtggagtgtgtaatgccc 16642196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 27015205 - 27015370
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| ||    
T  27015205 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggatcaaagcttcaagatgtgaatcttgaagaaccaaaagaggg 27015303  T
Q  110 ggctcttg-ggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||| | ||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||    
T  27015304 ggctcttgtgaaaagggttggtgccttttgggga-agaatcatggggttgggaaacacatgagtggag 27015370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 5057721 - 5057885
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggg 110  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||  |||||||||||||||    
T  5057721 caaaggagagaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggatcaaagcttcaagatgtgaatctttgagaaccaaaagaggg 5057819  T
Q  111 gctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    ||| ||||| ||| ||||||||||||||||||| |||||||||||||| | ||||| ||||||||||    
T  5057820 gcttttgggaaaaaggttggtgccttttgggga-agattcatggggttggaaaacacatgagtggag 5057885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 40146944 - 40147099
Alignment:
Q  21 aacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggggctcttggg 119  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||    
T  40146944 aacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttggg 40147042  T
Q  120 -aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
     ||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  40147043 aaaatggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggag 40147099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 213141 - 213307
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatctt-gaagaaccaaaaga-g 108  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | |||||||||||| |    
T  213141 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttgggagaaccaaaagagg 213239  T
Q  109 gggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    ||||||||||| |||||||||||||||||||| || |||||||||||||| ||||||| ||||||||||    
T  213240 gggctcttgggaaaagggttggtgccttttggaga-agattcatggggttgggaaacacatgagtggag 213307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 28277989 - 28278154
Alignment:
Q  12 aaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga--gg 109  Q
    |||||||  |||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||| ||||||||||||  ||    
T  28277989 aaaggaggaaacttttagggt-tttagatactaaaggttgagggtctttggatgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggg 28278087  T
Q  110 ggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  28278088 ggctcttgggaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggag 28278154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 38746678 - 38746843
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||| |||||||||||| ||    
T  38746678 caaaggagagaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagtttcaagatgtgaatcttggagaaccaaaagaggg 38746776  T
Q  110 ggctctt-gggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||  | ||||||||||||||||||||||| |||||||||||||| |||||||  |||||||||    
T  38746777 ggctcttaagaaaagggttggtgccttttgggga-agattcatggggttgggaaacacgtgagtggag 38746843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 165
Target Start/End: Original strand, 316439 - 316593
Alignment:
Q  12 aaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaa-gaggg 110  Q
    |||||||||||||||||  ||  |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| | |||    
T  316439 aaaggagagaacttttattgtacttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagggggg 316538  T
Q  111 gctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaaca 165  Q
    |||||||||| ||||||||||||||||||||| ||||||||  |||| |||||||    
T  316539 gctcttgggagagggttggtgccttttggggagagattcataaggttgggaaaca 316593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 35615854 - 35615987
Alignment:
Q  21 aacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagagggg-ctcttggg 119  Q
    ||||||||| || |||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||    
T  35615854 aacttttagagtatttagatactaaaggttgagggtctttgagtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggggactcttggg 35615953  T
Q  120 aaagggttggtgccttttggggacagattcatgg 153  Q
    |||||| || ||||||||||||| ||||||||||    
T  35615954 aaaggggtgatgccttttggggagagattcatgg 35615987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 30802614 - 30802779
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagagg- 109  Q
    |||| ||| ||||||||||||| |||||||| |  ||||||||||||||| ||||||||||||||||||| || || | ||||  ||||||||||||||     
T  30802614 caaatgagggaacttttagggtatttagatattctaggttgagggtctttaggtgaggttcaaagcttcatgatgtta-tcttagagaaccaaaagagga 30802712  T
Q  110 ggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||||||||||    
T  30802713 ggctcttgggaaagggtttgtgccttttggggagagattcatggggttagaaaacacatgagtggag 30802779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 27638109 - 27637949
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggg 110  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||  ||||| |||||||||||||| ||||||| |||||||||| |||||||||||||||    
T  27638109 caaaggagggaacttttaaggt-tttagatactaaaggttgagaatctttgggtgaggttcaaag-ttcaagatgtgaatcttggagaaccaaaagaggg 27638012  T
Q  111 -gctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtg 173  Q
     ||||||||| ||||||||||||| |||||||   |||||||||||||||||||||| |||||||    
T  27638011 agctcttgggaaaagggttggtgcattttggg--aagattcatggggttaggaaacacatgagtg 27637949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 38 - 172
Target Start/End: Complemental strand, 10055175 - 10055040
Alignment:
Q  38 gatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagag-gggctcttgggaaagggttggtgccttt 136  Q
    |||||||||| |||| ||| ||| |||||| ||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| ||||||||||     
T  10055175 gatactaaagattgaaggtttttgggtgagattcaaagcttcaagatgtgaatcttggagaaccaaaagagagggctcttgggaaaggtttggtgcctta 10055076  T
Q  137 tggggacagattcatggggttaggaaacatatgagt 172  Q
    |||||| ||||||| |||||| ||||||| ||||||    
T  10055075 tggggagagattcacggggttgggaaacacatgagt 10055040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 30792923 - 30793073
Alignment:
Q  21 aacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggggctcttggg 119  Q
    ||||||||||||  |||||||||||||||||||||||||| ||||| |||||||||||||||| ||  |||||| |||||||||| | | |||| |||||    
T  30792923 aacttttagggtaattagatactaaaggttgagggtctttaggtgatgttcaaagcttcaagatgt-tatcttggagaaccaaaatatgtggct-ttggg 30793020  T
Q  120 aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagt 172  Q
    ||| ||||||||||||||||||| | |||||||||||| ||||||| ||||||    
T  30793021 aaaaggttggtgccttttggggagatattcatggggttgggaaacacatgagt 30793073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 33906491 - 33906377
Alignment:
Q  44 aaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagagggg-ctcttgggaaagggttggtgccttttgggga 142  Q
    |||||||||||||||||  ||||||||| |||| |||| | |||||||||| |||||||||| ||||| ||||||||| |||||||||||||||||||||    
T  33906491 aaaggttgagggtctttgagtgaggttcgaagcctcaaaatgtgaatcttgtagaaccaaaaaagggggctcttgggagagggttggtgccttttgggga 33906392  T
Q  143 cagattcatggggtt 157  Q
     ||||||||||||||    
T  33906391 gagattcatggggtt 33906377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 4160307 - 4160458
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||| |||||||| |||||||| |||||||||||||| |||||||| ||| ||||| |||||||| || |||||||||||| || ||||| |||||| ||    
T  4160307 caaatgagagaacatttagggtatttagatactaaagtttgagggt-tttgggtgatgttcaaagtttaaagaagtgaatcctggagaactaaaagaggg 4160405  T
Q  110 ggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaa 162  Q
    ||||||||||| |||||  ||| |||||||||| |||||||| ||||| ||||    
T  4160406 ggctcttgggagagggtaagtgtcttttggggagagattcatagggttgggaa 4160458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 14689902 - 14689774
Alignment:
Q  12 aaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaag-aggg 110  Q
    |||||||| |||||||||||  |||||||| | |||||| |||||||||  |||| |||||||| ||||||| |||||| ||| ||||||||||| ||||    
T  14689902 aaaggagaaaacttttagggcatttagatagtgaaggttaagggtctttgagtgatgttcaaagtttcaagatgtgaattttggagaaccaaaagaaggg 14689803  T
Q  111 gctcttgggaaagggttggtgccttttgg 139  Q
    | ||||| |||||||||||||||||||||    
T  14689802 gttcttgtgaaagggttggtgccttttgg 14689774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 16641524 - 16641479
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  16641524 gtgaggtgctgttaatttattaagaggcttattttattatttaata 16641479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 33906627 - 33906577
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtctttt 61  Q
    ||||| |||||||||||||||| |||||||| |||||||||||| ||||||    
T  33906627 caaagaagagaacttttagggtatttagatattaaaggttgaggttctttt 33906577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 16642124 - 16642079
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    |||||||| |||||||||||||| |||| |||||||||||||||||    
T  16642124 gtgaggtgttgttaatttattaagaggcatattttattatttaata 16642079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 21206074 - 21205985
Alignment:
Q  85 gtgaatcttgaagaaccaaaaga-ggggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtg 173  Q
    |||||||||  |||||||||||| |||| |||| |||||||||||||| |||||  ||| || ||||| ||||| ||||||| |||||||    
T  21206074 gtgaatcttagagaaccaaaagatggggttctttggaaagggttggtgtctttttcggagaggttcatagggttgggaaacacatgagtg 21205985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 10701039 - 10700982
Alignment:
Q  108 ggggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaaca 165  Q
    |||| ||||| ||||||||| || ||||||||||| ||||| ||||||||| ||||||    
T  10701039 ggggatcttgagaaagggtttgtaccttttggggagagatttatggggttaagaaaca 10700982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 8665080 - 8665245
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  8665080 caaaggagagaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 8665178  T
Q  110 ggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| | ||||||||    
T  8665179 ggctcttgggaaaagggttggtgccttttgggga-agattcatggggttgggaaacacaggagtggag 8665245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 38811573 - 38811409
Alignment:
Q  12 aaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagagggg 111  Q
    ||||||| |||||||||||||  |||||||||||||||||||||| ||| ||||||||||||||||| |||| |||||||||| |||||| |||||||||    
T  38811573 aaaggagggaacttttagggtacttagatactaaaggttgagggtatttgggtgaggttcaaagctttaagatgtgaatcttggagaacccaaagagggg 38811474  T
Q  112 ctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||||||||||||| |||||| ||| ||||||||| |||||||||||| || |||||||    
T  38811473 ctcttgggaaagggttggtgtcttttgcggagagattcatgaggttaggaaacacataagtggag 38811409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 27417446 - 27417281
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaag-agg 109  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| ||||||||||| |||    
T  27417446 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagctttaagatgtgaatcttggagaaccaaaagaagg 27417348  T
Q  110 ggctcttgggaaa-gggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    ||||||||||||| ||||||||| |||||||||| |||||||||||||| ||||||| ||||||||||    
T  27417347 ggctcttgggaaaggggttggtgtcttttgggga-agattcatggggttgggaaacacatgagtggag 27417281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 176
Target Start/End: Original strand, 2209379 - 2209546
Alignment:
Q  9 agcaaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagag 108  Q
    |||||| ||| ||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||    
T  2209379 agcaaatgagggaacttttagggt-tttagatactaaagattgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaacgag 2209477  T
Q  109 ggg-ctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    ||| |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  2209478 gggactcttgggaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggag 2209546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 6655629 - 6655794
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| |||| |||||||||| |||||||||||| ||    
T  6655629 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaaactttaagatgtgaatcttggagaaccaaaagaggg 6655727  T
Q  110 ggctctt-gggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    ||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||| ||||||||||    
T  6655728 ggctcttggggaaagggttggtgccttttggaga-agattcatggggttgggaaacacatgagtggag 6655794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 50263193 - 50263028
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| |||||| ||||||||||||| |||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  50263193 caaaggagggaacttttagggt-tttagacactaaaggttgagagtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 50263095  T
Q  110 ggctcttgg-gaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||  ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  50263094 ggctcttggaaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggag 50263028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 33989535 - 33989700
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    ||||| ||| |||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| | ||    
T  33989535 caaagcagataacttttagggtatttagatactaaagtttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttgaagaaccaaaataggg 33989634  T
Q  110 ggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    ||||||||||| | |||||||||||||| |||| ||||||||||| || ||||||| ||||||||||    
T  33989635 ggctcttgggagaaggttggtgcctttt-gggagagattcatgggattgggaaacacatgagtggag 33989700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 40630667 - 40630822
Alignment:
Q  21 aacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggg-gctcttg-g 118  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||| ||| ||| |    
T  40630667 aacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggagcttttgtg 40630765  T
Q  119 gaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
     ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  40630766 aaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggag 40630822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 55085861 - 55085695
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagc-ttcaagaagtgaatcttgaagaaccaaaaga-g 108  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| ||||||| || ||||||| |||||||||||| |    
T  55085861 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttaaaagctttcaagatgtaaatcttggagaaccaaaagagg 55085763  T
Q  109 gggctctt-gggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  55085762 gggctcttggggaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggag 55085695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 12073066 - 12073227
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggg 110  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||| |||||||||||||||    
T  12073066 caaaggatggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtaaatcttggagaaccaaaagaggg 12073164  T
Q  111 gctcttggg--aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtg 173  Q
    |||||||||  |||||||||||||||||||||   |||||||||||||| | ||||| |||||||    
T  12073165 gctcttgggaaaaagggttggtgccttttggg--aagattcatggggttggaaaacacatgagtg 12073227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 46703174 - 46703318
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||  |||| ||||||| ||    
T  46703174 caaaggagagaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttcgagaatcaaaagaggg 46703272  T
Q  110 ggctcttggg-aaagggttggtgccttttggggacagattcatgggg 155  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||    
T  46703273 ggctcttgggaaaagggttggtgccttttgggga-agattcatgggg 46703318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 54882693 - 54882855
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| |||||||||||| ||    
T  54882693 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaaaatgtgaatcttggagaaccaaaagaggg 54882791  T
Q  110 ggctctt-gggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtg 173  Q
    |||||||  | |||||||||||||||||||| || |||||||||||||| ||||||| |||||||    
T  54882792 ggctcttatgaaaagggttggtgccttttggaga-agattcatggggttgggaaacacatgagtg 54882855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 26363942 - 26364103
Alignment:
Q  15 ggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggggct 113  Q
    |||| ||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||| |||||||||||| ||||||    
T  26363942 ggagggaacttttagggt-tttagatactaaaggttgagggcctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggct 26364040  T
Q  114 cttg-ggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||| | |||||||||| ||||||||| || |||||||||||||| ||||||| ||||||||||    
T  26364041 cttgtgaaaagggttggggccttttggaga-agattcatggggttgggaaacacatgagtggag 26364103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 35662115 - 35662280
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||| ||||||||||||||| | |||||||||||||||||||| |||||| |||||||||||||||||||| | |||||||||| |||||||||||| ||    
T  35662115 caaatgagagaacttttaggat-tttagatactaaaggttgagagtctttgggtgaggttcaaagcttcaatatgtgaatcttggagaaccaaaagaggg 35662213  T
Q  110 ggctctt-gggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    ||||||| || ||||||||||||||||||||||| |||||||||||||| | ||||| |||| |||||    
T  35662214 ggctcttaggaaaagggttggtgccttttgggga-agattcatggggttggaaaacacatgaatggag 35662280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 46570041 - 46569877
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||| ||||||||| ||||||||||||| ||||| ||||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  46570041 caaaggagggaaattttagggt-tttagatactaaatgttgaaggtctttaggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 46569943  T
Q  110 ggctcttg-ggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtgga 175  Q
    |||||||| | ||||| |||||||||||| |||| |||||||||||||| ||||||| |||||||||    
T  46569942 ggctcttgtgaaaaggattggtgcctttt-gggaaagattcatggggttgggaaacaaatgagtgga 46569877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 8653273 - 8653384
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  8653273 caaaggagagaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 8653371  T
Q  110 ggctcttgggaaa 122  Q
    |||||||||||||    
T  8653372 ggctcttgggaaa 8653384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 41964089 - 41964249
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||| |||||||||||| ||    
T  41964089 caaaggagggaacttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaaagcttcatgatgtgaatcttggagaaccaaaagaggg 41964188  T
Q  110 ggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagt 172  Q
    |||||||||| |||||||| ||  ||||| |||| |||||||||||||| ||||||| ||||||    
T  41964189 ggctcttgggaaaagggttagt--ctttt-gggaaagattcatggggttgggaaacacatgagt 41964249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 379051 - 379217
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||||||||||||||| | | |||||||||||||||||||| |||| ||||||||||||||||||| || |||||||||| |||||||||||| ||    
T  379051 caaaggagagaacttttaggatttgtagatactaaaggttgagggactttgggtgaggttcaaagcttcatgatgtgaatcttggagaaccaaaagaggg 379150  T
Q  110 ggctcttg-ggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||| | ||||||| ||||||||||||||| ||||||||| |  | ||||||| ||||||||||    
T  379151 ggctcttgtgaaaagggtcggtgccttttgggga-agattcatgagaatgggaaacacatgagtggag 379217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 50674341 - 50674176
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| |||| |||||||| ||| ||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  50674341 caaaggagggaacttttagggt-tttaaatactaaatgttaagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 50674243  T
Q  110 ggctct-tgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    ||||||   | |||||||||||||||| | |||| |||||||||||||| ||||||| ||||||||||    
T  50674242 ggctctaatgaaaagggttggtgccttat-gggaaagattcatggggttgggaaacacatgagtggag 50674176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 61 - 176
Target Start/End: Original strand, 8647860 - 8647976
Alignment:
Q  61 tggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggggctcttggg-aaagggttggtgccttttggggacagattcatggggtta 158  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||     
T  8647860 tggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgccttttgggga-agattcatggggttg 8647958  T
Q  159 ggaaacatatgagtggag 176  Q
    ||||||| | ||||||||    
T  8647959 ggaaacacaggagtggag 8647976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 33089582 - 33089717
Alignment:
Q  21 aacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggggctcttggg 119  Q
    |||||||||| | |||||||||||||| |||||||||||| |||||||||||||| || |||| |||||||||| |||| ||||||| ||||||||||||    
T  33089582 aacttttagg-tatttagatactaaagattgagggtctttgggtgaggttcaaagtttgaagatgtgaatcttggagaatcaaaagagggggctcttggg 33089680  T
Q  120 aaagggttggtgccttttggggacagattcatggggt 156  Q
    | |||||||||| ||||||| || |||||||||||||    
T  33089681 agagggttggtgtcttttggagagagattcatggggt 33089717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 3785790 - 3785909
Alignment:
Q  38 gatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggggctcttgggaaagggttggtgccttt 136  Q
    |||||||||||||||| |||||| || ||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  3785790 gatactaaaggttgagagtctttaggcgagattcaaagcttcaagatgtgaatcttgaagaaccaaaagagggggctcttggaaaagggttggtgccttt 3785889  T
Q  137 tggggacagattcatggggt 156  Q
    || ||| ||| | |||||||    
T  3785890 tgaggagagaattatggggt 3785909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 10071558 - 10071657
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggg 110  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |||||||||||||||    
T  10071558 caaaggagggaacttttaaggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagctttaagatgtgaatcttggagaaccaaaagaggg 10071656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 35370833 - 35370705
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaacc-aaaaga-g 108  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||||||| || |||||||||||||| |||| |||||||||| |||||| |||||| |    
T  35370833 caaaggagggaacttttaaggtatttagatactaaaggttgagggtctttgggagaggttcaaagctttaagatgtgaatcttggagaacctaaaagagg 35370734  T
Q  109 gggctcttgggaaagggttggtgcctttt 137  Q
    ||| |||||||| ||||||||| ||||||    
T  35370733 gggttcttgggagagggttggtccctttt 35370705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 22883248 - 22883093
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||| ||| ||| ||||||||| ||||||||||||||||||||  | |||  ||||||||||||||||||||| |||||||||| ||||| |||||| ||    
T  22883248 caaatgagggaaattttagggtatttagatactaaaggttgagactatttgagtgaggttcaaagcttcaagatgtgaatcttggagaacaaaaagaggg 22883149  T
Q  110 ggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaaca 165  Q
    ||||||||||| |||| || | |||||||| || ||| |||| |||||||||||||    
T  22883148 ggctcttgggagagggctgataccttttggagagagactcatagggttaggaaaca 22883093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 22934912 - 22934757
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||| ||| ||| ||||||||| ||||||||||||||||||||  | |||  ||||||||||||||||||||| |||||||||| ||||| |||||| ||    
T  22934912 caaatgagggaaattttagggtatttagatactaaaggttgagactatttgagtgaggttcaaagcttcaagatgtgaatcttggagaacaaaaagaggg 22934813  T
Q  110 ggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaaca 165  Q
    ||||||||||| |||| || | |||||||| || ||| |||| |||||||||||||    
T  22934812 ggctcttgggagagggctgataccttttggagagagactcatagggttaggaaaca 22934757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 10071966 - 10072065
Alignment:
Q  34 tttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggggctcttg-ggaaagggttggtg 131  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| |||||| |||||||||| | ||||||||||||    
T  10071966 tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaactaaaagagggggctcttgtgaaaagggttggtg 10072065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 35369912 - 35369807
Alignment:
Q  34 tttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaacc-aaaaga-ggggctcttgggaaagggttggtg 131  Q
    ||||||||||||||||||||||||||| |||||||||||||| || |||| |||||||||| |||||| |||||| |||| |||||||| |||||||||     
T  35369912 tttagatactaaaggttgagggtctttgggtgaggttcaaagatttaagatgtgaatcttggagaacctaaaagagggggttcttgggagagggttggtc 35369813  T
Q  132 cctttt 137  Q
    ||||||    
T  35369812 cctttt 35369807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 172
Target Start/End: Complemental strand, 47514997 - 47514835
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagag-g 109  Q
    |||| ||| |||||||||||||  ||| | |||||||||||| ||||||  ||||| ||||||||||||||||  |||||||||  |||||||||||| |    
T  47514997 caaatgagtgaacttttagggtacttaaacactaaaggttgaaggtcttcgggtgaagttcaaagcttcaagatatgaatcttggtgaaccaaaagagtg 47514898  T
Q  110 ggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagt 172  Q
    | ||||||||||| | ||| || |||||| ||| |  | ||| ||||| ||||||| ||||||    
T  47514897 gactcttgggaaatgattgatgtcttttgaggaaatgtgcatagggttgggaaacacatgagt 47514835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 156
Target Start/End: Complemental strand, 26699943 - 26699795
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga--g 108  Q
    |||| ||| |||||| |||||  ||||||||||||||||||| | ||||| | ||||||||||| |||||||| |||||||||  ||| ||||| ||  |    
T  26699943 caaatgagggaacttgtagggcatttagatactaaaggttgaagatctttggttgaggttcaaaacttcaagatgtgaatcttagagagccaaatgaagg 26699844  T
Q  109 gggctcttgg-gaaagggttggtgccttttggggacagattcatggggt 156  Q
    ||| ||||||  ||||||||||||||||||  | | |||||||||||||    
T  26699843 gggatcttggaaaaagggttggtgccttttcagaagagattcatggggt 26699795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 136
Target Start/End: Original strand, 6719259 - 6719384
Alignment:
Q  12 aaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagag-gg 110  Q
    |||||||||||||||||||    |||||  ||||||||||| ||| ||  |||||| ||||||| ||||||| |||||||||| | ||| ||||||| ||    
T  6719259 aaaggagagaacttttaggcaacttagaggctaaaggttgaaggttttagggtgagattcaaaggttcaagatgtgaatcttggaaaactaaaagagtgg 6719358  T
Q  111 gctcttgggaaagggttggtgccttt 136  Q
      |||||||||||||||| |||||||    
T  6719359 attcttgggaaagggttgatgccttt 6719384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 65 - 165
Target Start/End: Complemental strand, 25723658 - 25723557
Alignment:
Q  65 gaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggg-gctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaa 163  Q
    ||||||||||||||||| | |||||||||| ||||||||||||||| ||||||||  || ||||  |||||||||| || || ||| ||||||| |||||    
T  25723658 gaggttcaaagcttcaaaatgtgaatcttggagaaccaaaagagggagctcttggataatggttaatgccttttggagagagcttcgtggggttgggaaa 25723559  T
Q  164 ca 165  Q
    ||    
T  25723558 ca 25723557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 34112284 - 34112450
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagagg- 109  Q
    ||||||||| ||||||||||    || || ||||||| ||||||||||||  ||||| ||||||   || |   |||||||||| | |||| ||||| |     
T  34112284 caaaggagataacttttaggaaactttgaaactaaagattgagggtctttgtgtgagattcaaaatgtccaattgtgaatcttggataacctaaagacga 34112383  T
Q  110 ggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    ||||||| | ||||||||||||||||||||||| || |||| |||||| | ||||| ||||||||||    
T  34112384 ggctcttagaaaagggttggtgccttttggggagaggttcacggggttggaaaacacatgagtggag 34112450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 32091270 - 32091326
Alignment:
Q  38 gatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttg 94  Q
    ||||||||| |||||||||||||  |||||||||||| |||||||| ||||||||||    
T  32091270 gatactaaatgttgagggtctttgagtgaggttcaaaacttcaagatgtgaatcttg 32091326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 43135899 - 43135810
Alignment:
Q  52 agggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggggctcttgggaaagggttggtgccttttgggg 141  Q
    ||||||||| ||||| ||| ||||  || | | ||||||| ||  ||||||||||||||||||||| || |||||||||| |||||||||    
T  43135899 agggtctttgggtgatgtttaaagtgtccaaatgtgaatcatggtgaaccaaaagaggggctcttgagagagggttggtgtcttttgggg 43135810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 15115801 - 15115757
Alignment:
Q  261 tgaggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    ||||||| |||| ||||||||| ||||||||||||||||||||||    
T  15115801 tgaggtgttgttgatttattaagaggcttattttattatttaata 15115757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 22629384 - 22629290
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaa 105  Q
    |||| ||| |||||||||||   |||||| |||||||||| || |||| | |||||| || |||  ||||||| |||||||||| ||||||||||    
T  22629384 caaatgagtgaacttttaggaaatttagaaactaaaggttcagtgtctctgggtgagatttaaaagttcaagatgtgaatcttggagaaccaaaa 22629290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 154
Target Start/End: Original strand, 41961110 - 41961224
Alignment:
Q  42 ctaaaggttgagggtcttttgg-tgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagagggg-ctcttgggaaagggttggtgccttttgg 139  Q
    ||||||| ||||||||||| || |||| |||||||  || | | |||||||||| |||||| ||| ||||| |||| |||| | ||| ||||| ||||||    
T  41961110 ctaaagggtgagggtctttggggtgagattcaaagtgtccaaatgtgaatcttgtagaaccgaaaaagggggctctagggagaaggtcggtgctttttgg 41961209  T
Q  140 ggacagattcatggg 154  Q
    ||| |||||||||||    
T  41961210 ggagagattcatggg 41961224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 15010576 - 15010621
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    |||||||  |||| ||||||||| ||||||||||||||||||||||    
T  15010576 gtgaggtattgttgatttattaagaggcttattttattatttaata 15010621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 4512884 - 4512720
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||  |||||||||||| ||    
T  4512884 caaaggagggaacttttagggt-tttagattctaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttagagaaccaaaagaggg 4512786  T
Q  110 ggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  4512785 ggctcttgggaaagggttggtgccttttgggga-agattcatggggtttggaaacacatgagtggag 4512720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 22269647 - 22269811
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggg 110  Q
    |||||||| |||| |||||||| | |||||||||||| |||||||||||| |||||||||||||||| ||||| |||||||||| |||||||||||||||    
T  22269647 caaaggagggaacatttagggtatgtagatactaaagtttgagggtctttgggtgaggttcaaagctacaagatgtgaatcttggagaaccaaaagaggg 22269746  T
Q  111 gctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||   ||||||| ||||||||||    
T  22269747 gctcttgggaaagagttggtgccttttgggga-agattcatggggaggggaaacacatgagtggag 22269811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 3258671 - 3258834
Alignment:
Q  14 aggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggggc 112  Q
    ||||| ||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||| ||||| |||||| |||||    
T  3258671 aggagggaacttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaaagcttcatgatgtgaatcttggagaacaaaaagatggggc 3258770  T
Q  113 tcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    ||||||| ||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||    
T  3258771 tcttgggaaaagggttggtgccttttgggga-agattcatggggatgggaaacatatgagtggag 3258834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 6431644 - 6431806
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||| |||||||||||| ||    
T  6431644 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaaacttcaagatgtgaatcttggagaaccaaaagaggg 6431742  T
Q  110 ggctctt-gggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtg 173  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||| | ||||| |||||||    
T  6431743 ggctcttggggaaagggttggtgccttttgggga-agattcatggggttggaaaacacatgagtg 6431806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 34311212 - 34311046
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||  ||||||||||||| | |||||||||||||||||||||| || |||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  34311212 caaaggaaggaacttttagggtatgtagatactaaaggttgagggtccttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 34311113  T
Q  110 ggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||| ||||||||||||||||||||||| || ||||||||| | | ||||| ||||||||||    
T  34311112 ggctcttgggaaaagggttggtgccttttgggga-aggttcatggggatggaaaacacatgagtggag 34311046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 32358331 - 32358199
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  32358331 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 32358233  T
Q  110 ggctcttg-ggaaagggttggtgccttttgggga 142  Q
    |||||||| | |||||||||||||||||||||||    
T  32358232 ggctcttgtgaaaagggttggtgccttttgggga 32358199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 29608414 - 29608574
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||| |||||||||||| ||    
T  29608414 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaaacttcaagatgtgaatcttggagaaccaaaagaggg 29608512  T
Q  110 ggctcttg-ggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||| | |||||||||||||||||||      ||||||||||||| ||||||| ||||||||||    
T  29608513 ggctcttgtgaaaagggttggtgccttttg------gattcatggggttgggaaacacatgagtggag 29608574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 2389955 - 2390119
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    ||||||||  |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| | |||||||||| ||    
T  2389955 caaaggaggaaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggaaaaccaaaagaggg 2390053  T
Q  110 ggctcttg-ggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtgga 175  Q
    |||| ||| | |||||||||||| |||||||||| |||||||||||||| | ||||| |||||||||    
T  2390054 ggctattgcgaaaagggttggtggcttttgggga-agattcatggggttggaaaacacatgagtgga 2390119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 4509192 - 4509036
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggg 110  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||        ||||||||||||||    
T  4509192 caaaggatggaacttttagggt-tttagatactaaaggttgagggtttttgggtgaggttcaaagcttcaagatgtga--------gaaccaaaagaggg 4509102  T
Q  111 -gctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
     |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  4509101 agctcttgggaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggag 4509036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 4511034 - 4510878
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggg 110  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||        ||||||||||||||    
T  4511034 caaaggatggaacttttagggt-tttagatactaaaggttgagggtttttgggtgaggttcaaagcttcaagatgtga--------gaaccaaaagaggg 4510944  T
Q  111 -gctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
     |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  4510943 agctcttgggaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggag 4510878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 2361466 - 2361301
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||| | |||||||||||||| |||||||||||| |||||| |||||  |||||||| ||||||||||||||| ||||||| ||    
T  2361466 caaaggagggaacttttaggat-tttagatactaaagattgagggtctttgggtgagattcaatccttcaagatgtgaatcttgaagaatcaaaagaggg 2361368  T
Q  110 ggctcttg-ggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||| | |||||||||||||||||||||||  ||||||||||||| ||||||| ||||||||||    
T  2361367 ggctcttgtgaaaagggttggtgccttttgggga-tgattcatggggttgggaaacacatgagtggag 2361301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 172
Target Start/End: Complemental strand, 22328895 - 22328732
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    ||||||||| |||||||||||| ||||||||||||||||||||| ||||| |  |||||| |||||||||||| || ||||||| |||||||||||| ||    
T  22328895 caaaggagaaaacttttagggtatttagatactaaaggttgaggatctttggtggaggttaaaagcttcaagatgtaaatcttggagaaccaaaagaggg 22328796  T
Q  110 ggctctt-gggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagt 172  Q
    ||||||| || |||| |||||||||||||||||| |||||||| ||||| ||||| | ||||||    
T  22328795 ggctcttaggaaaagagttggtgccttttggggagagattcatagggttgggaaaaacatgagt 22328732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 5116307 - 5116448
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| | ||||||||||| |||| |||||||||||||||||||||| ||||| ||||||| |||||||| |||||||||  |||||||||||| ||    
T  5116307 caaaggaggggacttttagggtatttaaatactaaaggttgagggtctttaggtgatgttcaaaacttcaagatgtgaatctttgagaaccaaaagaggg 5116406  T
Q  110 ggctcttgggaaagggttggtgccttttggggacagattcat 151  Q
    ||||||||||| ||||| |||||||||||| || ||||||||    
T  5116407 ggctcttgggagagggtcggtgccttttggagagagattcat 5116448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 6360407 - 6360242
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||| |||| ||||||| |||||||||| |||||||||||| ||    
T  6360407 caaaggagagaacttttagggt-tttagatattaaaggttgagggtctttgggtgaggttaaaagtttcaagatgtgaatcttggagaaccaaaagaggg 6360309  T
Q  110 ggctcttg-ggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||| | |||||  ||||||||||||  || |||||||||| |||   ||||| ||||||||||    
T  6360308 ggctcttgagaaaaggaatggtgccttttgaaga-agattcatggagttgaaaaacacatgagtggag 6360242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 48599819 - 48599683
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||          ||||||||||| ||    
T  48599819 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgt----------gaaccaaaagaggg 48599731  T
Q  110 ggctcttg-ggaaagggttggtgccttttggggacagattcatggggtt 157  Q
    |||||||| | ||||||||||||||||||||||| ||||||||||||||    
T  48599730 ggctcttgtgaaaagggttggtgccttttgggga-agattcatggggtt 48599683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 30814438 - 30814505
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttc 79  Q
    |||||||| ||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||    
T  30814438 caaaggagggaacttttagggt-tttagatacttaaggttgagggtctttgggtgaggttcaaagcttc 30814505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 8359708 - 8359648
Alignment:
Q  115 ttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  8359708 ttgggaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggag 8359648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 22552897 - 22552791
Alignment:
Q  47 ggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggggctcttgggaaagggttggtgccttttggggacag 145  Q
    |||||||||||||| |||||| || ||||  |||| | |||||||||  |||||||||||| ||||||||| ||||| ||||||||||||||||| | ||    
T  22552897 ggttgagggtctttgggtgagatttaaagggtcaaaatgtgaatcttagagaaccaaaagagggggctctt-ggaaacggttggtgccttttgggaaaag 22552799  T
Q  146 attcatgg 153  Q
    ||||||||    
T  22552798 attcatgg 22552791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 16459160 - 16459205
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  16459160 gtgaggtgctgttaatttattaagaggcttattttattatttaata 16459205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 14260477 - 14260432
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  14260477 gtgaggtgttgttaatttattaagaggcttattttattatttaata 14260432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 32304387 - 32304338
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaatataat 309  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||||||||    
T  32304387 gtgaggtgttgttgatttattaagaggcttattttattatttaatataat 32304338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 241280 - 241235
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||||    
T  241280 gtgaggtgttgttgatttattaagaggcttattttattatttaata 241235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 1494707 - 1494752
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    |||| ||| ||||||||||||||  |||||||||||||||||||||    
T  1494707 gtgatgtgttgttaatttattaagtggcttattttattatttaata 1494752  T

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Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 11068998 - 11068953
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    |||||||| |||| |||||||||  |||||||||||||||||||||    
T  11068998 gtgaggtgttgttgatttattaagtggcttattttattatttaata 11068953  T

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Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 20620944 - 20620899
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    |||||||| |||| |||||||||  |||||||||||||||||||||    
T  20620944 gtgaggtgttgttgatttattaagtggcttattttattatttaata 20620899  T

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Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 23794244 - 23794191
Alignment:
Q  96 agaaccaaaagagg-ggctcttgggaaagggttggtgccttttggggacagatt 148  Q
    |||||||||||| | || || ||||||||||||||||||||||||||| |||||    
T  23794244 agaaccaaaagatgaggatcatgggaaagggttggtgccttttggggagagatt 23794191  T

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Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 32159583 - 32159632
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaatataat 309  Q
    |||| ||| |||| |||||||||  |||||||||||||||||||||||||    
T  32159583 gtgatgtgttgttgatttattaagtggcttattttattatttaatataat 32159632  T

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Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 45726603 - 45726767
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggg 110  Q
    |||| ||| ||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  45726603 caaatgagggaacttttagggt-tttagatactaaaggttgagagtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 45726701  T
Q  111 -gctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
     |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  45726702 agctcttgggaaagggttggtgccttttgggga-agattcatggggtttggaaacacatgagtggag 45726767  T

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Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 42288604 - 42288440
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||| ||    
T  42288604 caaatgagagaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaaacttcaagatgtgaatcttgaagaaccaaaagaggg 42288506  T
Q  110 ggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||| |||||||||||||||||||||   |||||||||||||| ||||||| ||||||||||    
T  42288505 ggctcttgggaaaagggttggtgccttttggg--aagattcatggggttgggaaacacatgagtggag 42288440  T

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Target: chr2; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 1632227 - 1632062
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||  ||||||||||| ||    
T  1632227 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgagtgaggttcaaagcttcaagatgtgaatcttggggaaccaaaagaggg 1632129  T
Q  110 ggctcttg-ggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||| | |||||||||||| |||||||||| |||||||||||||| ||||||| ||||||||||    
T  1632128 ggctcttgtgaaaagggttggtgtcttttgggga-agattcatggggttgggaaacacatgagtggag 1632062  T

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Target: chr2; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 35447379 - 35447214
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttga-agaaccaaaagagg 109  Q
    |||||||||||||||||||||| |||||||||||||||||||| || |||  ||||||||||||||||||||| |||| |||||| ||||||||||||||    
T  35447379 caaaggagagaacttttagggt-tttagatactaaaggttgagagtatttgtgtgaggttcaaagcttcaagatgtgagtcttgagagaaccaaaagagg 35447281  T
Q  110 ggctcttg-ggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||| | |||||||||||||||||| |||| |||||||||||||| ||||||| ||||||||||    
T  35447280 ggctcttgtgaaaagggttggtgcctttt-gggaaagattcatggggttgggaaacacatgagtggag 35447214  T

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Target: chr2; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 17450264 - 17450423
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  17450264 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgagtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 17450362  T
Q  110 ggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgag 171  Q
    |||||||||||||||||||||||| ||| | || |||||||||||| | ||||||| |||||    
T  17450363 ggctcttgggaaagggttggtgcccttt-gtgaaagattcatggggatgggaaacacatgag 17450423  T

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Target: chr2; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 33647841 - 33648004
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagagg- 109  Q
    ||||||||||||||||||| || ||||||||||||||||||| ||||||| |||||||||||||| ||||||| |||||||||| |||| |||||||||     
T  33647841 caaaggagagaacttttagagtatttagatactaaaggttgaaggtctttgggtgaggttcaaagtttcaagatgtgaatcttggagaatcaaaagagga 33647940  T
Q  110 ggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagt 172  Q
    |||||||||| ||||||||||||||||||| ||| ||||||| | |||| | ||||||||||||    
T  33647941 ggctcttgggaaaagggttggtgccttttgaggagagattcacgaggttggaaaacatatgagt 33648004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 42262105 - 42261950
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| || |||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| | ||    
T  42262105 caaaggagggagcttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaaaaggg 42262006  T
Q  110 ggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaaca 165  Q
    ||||||| ||| ||||||||||||||| || || ||||||||||| || |||||||    
T  42262005 ggctctttggagagggttggtgcctttaggtgagagattcatgggattgggaaaca 42261950  T

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Target: chr2; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 24397739 - 24397896
Alignment:
Q  21 aacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggggctcttggg 119  Q
    |||||||||||| ||||||||||||||||||| |||||||  ||||||||||||||||||| | |||||||||| |||||||||||| ||||||||||||    
T  24397739 aacttttagggtatttagatactaaaggttgacggtctttgtgtgaggttcaaagcttcaaaatgtgaatcttggagaaccaaaagagggggctcttggg 24397838  T
Q  120 -aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
     |||||||||||||||||| |||| ||| |||| ||| | | ||||| ||||||||||    
T  24397839 aaaagggttggtgccttttagggagagactcatcgggctggtaaacacatgagtggag 24397896  T

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Target: chr2; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 7450975 - 7451138
Alignment:
Q  12 aaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggg 110  Q
    ||||||| ||||||||||||| |||||||||||||||||| | |||||| ||||||||||||||||||| || |||||||||| |||||||||||| |||    
T  7450975 aaaggagggaacttttagggt-tttagatactaaaggttg-gcgtctttgggtgaggttcaaagcttcaggatgtgaatcttggagaaccaaaagagggg 7451072  T
Q  111 gctc-ttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||| |||| ||||||||| || ||||||| || ||||| |||||||| | ||||| ||||||||||    
T  7451073 gctctttggtaaagggttgatgacttttggaga-agatttatggggttggaaaacacatgagtggag 7451138  T

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Target: chr2; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 30218529 - 30218374
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagag-g 109  Q
    |||||||| ||||||||||||| ||||||||||| | ||||||||||||| ||||||||||||| | |||| | |||||||||| | ||||||||  | |    
T  30218529 caaaggagggaacttttagggtatttagatactatatgttgagggtctttgggtgaggttcaaaacatcaaaatgtgaatcttggacaaccaaaaatgag 30218430  T
Q  110 ggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaaca 165  Q
    ||||  ||||| || ||| |||||||||||||| |||||||||||||| |||||||    
T  30218429 ggcttatgggagagagttagtgccttttggggagagattcatggggttgggaaaca 30218374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 40935675 - 40935543
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagagg- 109  Q
    ||||||||||| | |||||||   ||||| ||||||||||||||| |||| || ||| |||||||  || | | |||||||| | |||||||||||| |     
T  40935675 caaaggagagaccgtttagggaacttagaaactaaaggttgagggcctttgggagagattcaaagtgtccaaatgtgaatctaggagaaccaaaagatga 40935576  T
Q  110 ggctcttgggaaagggttggtgccttttgggga 142  Q
    ||||||||||||||||||||||||| |||||||    
T  40935575 ggctcttgggaaagggttggtgcctattgggga 40935543  T

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Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 24197645 - 24197703
Alignment:
Q  85 gtgaatcttgaagaaccaaaagagggg-ctcttgggaaagggttggtgccttttgggga 142  Q
    ||||||||||  ||||||||||||||| ||||||||| |||||||||||||||||||||    
T  24197645 gtgaatcttggggaaccaaaagaggggactcttgggagagggttggtgccttttgggga 24197703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 23064569 - 23064614
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||||    
T  23064569 gtgaggtgttgttgatttattaagaggcttattttattatttaata 23064614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 16676021 - 16676078
Alignment:
Q  114 cttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgag 171  Q
    ||||||||||||||||||||||||  ||| | ||||||  |||| |||||||||||||    
T  16676021 cttgggaaagggttggtgccttttaaggagaaattcatttggttgggaaacatatgag 16676078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 11231 - 11396
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  11231 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagatgg 11329  T
Q  110 ggctctt-gggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    ||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||| ||||||||||    
T  11330 ggctcttggggaaagggttggtgccttttggaga-agattcatggggttgggaaacacatgagtggag 11396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 43402285 - 43402120
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  43402285 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 43402187  T
Q  110 ggctcttg-ggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||| | ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  43402186 ggctcttgagaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggag 43402120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 6096091 - 6095929
Alignment:
Q  14 aggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggggc 112  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| |||||    
T  6096091 aggagagaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggc 6095993  T
Q  113 tc-ttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    || || | ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  6095992 tcttttgaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggag 6095929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 47303925 - 47304090
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||||||||||||| ||| ||||||||||||| ||||| ||||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  47303925 caaaggagagaacttttatggt-tttagatactaaatgttgaaggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 47304023  T
Q  110 ggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  47304024 ggctcttgggaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggag 47304090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 49199966 - 49199801
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||| |||||||||||| ||    
T  49199966 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagtttcaagatgtgaatcttggagaaccaaaagaggg 49199868  T
Q  110 ggctcttg-ggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||| ||| | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  49199867 ggctattgtgaaaagggttggtgccttttgggga-agattcatggggttgggaaacatatgagtggag 49199801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 30235798 - 30235963
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  30235798 caaaggagagaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 30235896  T
Q  110 ggctcttg-ggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||| | ||||||||||||||||||||||| | |||||||||||| | ||||| | ||||||||    
T  30235897 ggctcttgtgaaaagggttggtgccttttgggga-atattcatggggttggaaaacacaagagtggag 30235963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 46860143 - 46860309
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||| ||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||| |||||||||||| ||    
T  46860143 caaatgagagaacttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaaagcttcatgatgtgaatcttggagaaccaaaagaggg 46860242  T
Q  110 ggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||| ||||||||||||||||||||||| |||||||| ||| | ||||||| ||||||||||    
T  46860243 ggctcttgggaaaagggttggtgccttttgggga-agattcatagggatgggaaacacatgagtggag 46860309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 41820016 - 41819852
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    ||||||||| |||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||  |||||||||||| ||    
T  41820016 caaaggagataacttttaggtt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttagagaaccaaaagaggg 41819918  T
Q  110 ggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||| |||||||||||||||||||||   |||||||||||||| ||||||| ||||||||||    
T  41819917 ggctcttgggaaaagggttggtgccttttggg--aagattcatggggttgggaaacacatgagtggag 41819852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 34490886 - 34491051
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  34490886 caaaggagagaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 34490984  T
Q  110 ggctcttg-ggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||| | |||||||||||||||||||| || |||||||||| |||   ||||| ||||||||||    
T  34490985 ggctcttgtgaaaagggttggtgccttttggaga-agattcatggagttgaaaaacacatgagtggag 34491051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 43404228 - 43404063
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||| ||| ||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||| |||||||||||| ||    
T  43404228 caaatgagggaacttttagggt-tttagatactaaaagttgagggtctttgggtgaggttcaaagtttcaagatgtgaatcttggagaaccaaaagaggg 43404130  T
Q  110 ggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||| | ||||| ||||||||||    
T  43404129 ggctcttgggaaaagggttggtgccttttgggga-agattcatggggttggaaaacacatgagtggag 43404063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 54593377 - 54593543
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| | |||||||||||||||||||||| || |||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  54593377 caaaggagggaacttttagggtatgtagatactaaaggttgagggtccttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 54593476  T
Q  110 ggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||| ||||||||||| ||||||||||| |||||||||||| | | ||||| ||||||||||    
T  54593477 ggctcttgggaaaagggttggtaccttttgggga-agattcatggggatggaaaacacatgagtggag 54593543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 28074290 - 28074454
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    ||||||||  |||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||| |||||||||||| ||    
T  28074290 caaaggaggaaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagtttcaagatgtgaatcttggagaaccaaaagaggg 28074388  T
Q  110 ggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||||||  |||||||| ||||||||| |||||||||||| | ||||||| ||||||||||    
T  28074389 ggctcttgggaaatagttggtgcgttttgggga-agattcatggggatgggaaacacatgagtggag 28074454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 36018523 - 36018689
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggg 110  Q
    |||||||||||||||| ||||| | ||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||| |||||||||||||||    
T  36018523 caaaggagagaactttcagggtatgtagatactaaaggttgagggtctttggatgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 36018622  T
Q  111 -gctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
     ||| ||||| ||||||||||||||||||||||| |||| ||||||| | ||||||| |||| |||||    
T  36018623 agcttttgggaaaagggttggtgccttttgggga-agatccatggggatgggaaacacatgaatggag 36018689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 40913011 - 40913177
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| | ||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||| | |||||||||| |||||||||||| ||    
T  40913011 caaaggaggggacttttagggt-tttagatactaaaggtttagggtctttgggtgaggttcaaagcttcaaaatgtgaatcttggagaaccaaaagaggg 40913109  T
Q  110 ggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||| |||||||||||||||||| ||   |||||||||||||| ||||||| ||||||||||    
T  40913110 ggctcttgggaaaagggttggtgcctttttggagaagattcatggggttgggaaacacatgagtggag 40913177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 4569624 - 4569789
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||| |||| ||||||| ||    
T  4569624 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtaaatcttggagaatcaaaagaggg 4569722  T
Q  110 ggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||| ||||||   |||||| ||||||| |||||||||||||| ||||||| ||||||||||    
T  4569723 ggctcttgggaaaagggggtgtgcctattgggga-agattcatggggttgggaaacacatgagtggag 4569789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 55302460 - 55302295
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggg 110  Q
    ||||||||  |||||||||||| ||||||||||||| ||||||||||||| | |||||||||||||||||||| |||||||||| |||||||||||||||    
T  55302460 caaaggaggaaacttttagggt-tttagatactaaaagttgagggtctttggatgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 55302362  T
Q  111 -gctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
     ||||||||| |||||||||||||||||| |||| | ||||||| |||| | ||||| ||||||||||    
T  55302361 agctcttgggaaaagggttggtgcctttt-gggaaaaattcatgaggttggaaaacacatgagtggag 55302295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 5434374 - 5434207
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||| | ||||||||| ||| ||| |||||||||  | |||||| |||||||||||| || ||||||  |||||||||||| ||    
T  5434374 caaaggagggaacttttaggatatttagataccaaaagttaagggtctttgagggaggtttaaagcttcaagatgtaaatcttatagaaccaaaagaggg 5434275  T
Q  110 ggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||| |||||||| |||  |||| |||| |||||||||||||||||||||| ||||||||||    
T  5434274 ggctcttgggaaaagggttagtgttttttagggagagattcatggggttaggaaacacatgagtggag 5434207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 26324008 - 26323861
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagag-g 109  Q
    ||||||||  |||||||| | | |||||||||||||||||||||||| || ||||| |||||||||||||||| || |||||||||||| |||||||| |    
T  26324008 caaaggaggaaacttttaagatatttagatactaaaggttgagggtcattgggtgaagttcaaagcttcaagatgtaaatcttgaagaatcaaaagagag 26323909  T
Q  110 ggctcttgggaaagggttggtgccttttggggacagattcatggggtt 157  Q
    |||| |||||||||||||||||| ||||  | | ||||||||||||||    
T  26323908 ggctattgggaaagggttggtgcattttcagcagagattcatggggtt 26323861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 34795542 - 34795689
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    ||||||||||| |||||||||| ||||||||||||||||||| |||| || ||||| ||||||||||||||||  ||||||||| ||||||| |||| ||    
T  34795542 caaaggagagatcttttagggtatttagatactaaaggttgatggtcgttgggtgatgttcaaagcttcaagatctgaatcttggagaaccagaagaggg 34795641  T
Q  110 ggctcttgggaaagggttggtgccttttggggacagattcatggggtt 157  Q
    || ||| |||| ||| ||  ||||||||| ||| ||||||||||||||    
T  34795642 ggttctagggagaggtttcatgccttttgaggagagattcatggggtt 34795689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 39127236 - 39127386
Alignment:
Q  15 ggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagagggg-ct 113  Q
    |||||||||||||||||| |||| ||||||||||||  ||| |||| ||||||||||||||||||||||  ||||||||  ||||| |||| ||||| ||    
T  39127236 ggagagaacttttagggtatttacatactaaaggtttggggccttt-ggtgaggttcaaagcttcaagatatgaatcttagagaactaaaataggggact 39127334  T
Q  114 cttgggaaagggttggtgccttttggggacagattcatggggttaggaaaca 165  Q
    ||||| | || ||||||||||||| |||| ||||||||| |||| |||||||    
T  39127335 cttggaagagagttggtgcctttttgggagagattcatgaggttgggaaaca 39127386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 175
Target Start/End: Original strand, 1683184 - 1683325
Alignment:
Q  35 ttagatactaaaggttgagggtcttttggtgaggttcaaa-gcttcaagaagtgaatcttgaagaaccaaaagagg-ggctcttgggaaagggttggtgc 132  Q
    ||||| |||||||||||||||||||| |||||| |||||| | ||||| | |||||||||| |||||||||||||  || | || |||||||||||||||    
T  1683184 ttagaaactaaaggttgagggtctttgggtgagattcaaatgtttcaa-atgtgaatcttggagaaccaaaagagaaggtttttcggaaagggttggtgc 1683282  T
Q  133 cttttggggacagattcatggggttaggaaacatatgagtgga 175  Q
     ||||||| | |||||||||||||| | ||||| |||||||||    
T  1683283 attttgggaagagattcatggggttggaaaacacatgagtgga 1683325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 35139209 - 35139054
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagctt-------caagaagtgaatcttgaagaaccaa 103  Q
    |||||||| | |||||| |||| ||||||||||||| ||||||||||||| | ||||||||||| |||        |||| |||||||||| ||||||||    
T  35139209 caaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatgaggttcaaaactttaagatgtaagatgtgaatcttggagaaccaa 35139110  T
Q  104 aag--aggggctcttgggaaagggttggtgccttttggggacagattcatggggtt 157  Q
    |||  | ||| |||| ||||||||||| ||||||||| ||| ||||||||| ||||    
T  35139109 aagaaatgggttcttcggaaagggttgatgccttttgaggagagattcatgaggtt 35139054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 36796079 - 36796229
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaa----tcttgaagaaccaaaag 106  Q
    ||||||||| |||||||||||   ||||| |||||||||||| ||||||| | |||||||||||||||||||| || ||    | |||||||||||||||    
T  36796079 caaaggagataacttttagggaacttagaaactaaaggttgaaggtctttagatgaggttcaaagcttcaagatgtaaacctcttttgaagaaccaaaag 36796178  T
Q  107 agggg-ctcttgggaaagggttggtgccttttggggacagattcatggggt 156  Q
    ||||| ||||| | ||| ||| |||   ||||||||| ||||||| |||||    
T  36796179 aggggactctttgaaaaaggtcggttgattttggggagagattcacggggt 36796229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 15065281 - 15065326
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  15065281 gtgaggtgttgttaatttattaagaggcttattttattatttaata 15065326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 43888266 - 43888311
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||||    
T  43888266 gtgaggtgttgttgatttattaagaggcttattttattatttaata 43888311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 18698522 - 18698564
Alignment:
Q  263 aggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    ||||| |||| ||||||||| ||||||||||||||||||||||    
T  18698522 aggtgttgttgatttattaagaggcttattttattatttaata 18698564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 22758208 - 22758253
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    |||||||| | || ||||||||| ||||||||||||||||||||||    
T  22758208 gtgaggtgttattgatttattaagaggcttattttattatttaata 22758253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 35960463 - 35960512
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaatataat 309  Q
    |||| ||| |||| |||||||||  |||||||||||||||||||||||||    
T  35960463 gtgatgtgttgttgatttattaagtggcttattttattatttaatataat 35960512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 31340536 - 31340501
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaag 47  Q
    |||||||||||||||||||||| ||||||||||||||    
T  31340536 caaaggagagaacttttagggt-tttagatactaaag 31340501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 7001 - 7166
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  7001 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 7099  T
Q  110 ggctcttg-ggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||| | ||||||||||||||||||||||| |||||||||||||| | ||||| ||||||||||    
T  7100 ggctcttgtgaaaagggttggtgccttttgggga-agattcatggggttggaaaacacatgagtggag 7166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 7482726 - 7482560
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga--g 108  Q
    ||||||||  |||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||  |    
T  7482726 caaaggaggaaacttttagggt-tttagatactaacggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 7482628  T
Q  109 gggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  7482627 gggctcttgggaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggag 7482560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 29135921 - 29136085
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggg 110  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||| |||||||||||||||    
T  29135921 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgagtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 29136019  T
Q  111 g-ctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    | |||||||| ||||||||||||||||||||||| |||||||||||||| ||||| | ||||||||||    
T  29136020 gactcttgggaaaagggttggtgccttttgggga-agattcatggggtt-ggaaaaacatgagtggag 29136085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 37167970 - 37168135
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| |||||||||  || ||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  37167970 caaaggagggaacttttacagt-tttagatactaaaggttgagggtttttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 37168068  T
Q  110 ggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  37168069 ggctcttgggaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggag 37168135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 42298460 - 42298305
Alignment:
Q  21 aacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggggctcttg-g 118  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| |||||||||| |    
T  42298460 aacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgtg 42298362  T
Q  119 gaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
     |||||||||||||||||||| || |||||||||||||| ||||||| ||||||||||    
T  42298361 aaaagggttggtgccttttggaga-agattcatggggttgggaaacacatgagtggag 42298305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 28242061 - 28242226
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| |||||||||||| ||    
T  28242061 caaaggagggaacttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaaagcttcaaaatgtgaatcttggagaaccaaaagaggg 28242160  T
Q  110 ggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||| |||||||||||||||||||||   ||||||||  |||| ||||||| ||||||||||    
T  28242161 ggctcttgggaaaagggttggtgccttttggg--aagattcataaggttgggaaacacatgagtggag 28242226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 34603249 - 34603411
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggg 110  Q
    |||||||| ||||||||||||| |||||||| |||||||||| ||||||| ||||| |||||||||||||||| |||||||||| |||||||||||||||    
T  34603249 caaaggagggaacttttagggt-tttagatattaaaggttgaaggtctttgggtgatgttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 34603347  T
Q  111 -gctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtg 173  Q
     ||||||||| ||||||||||||||||||||||| |||||||||||||| | ||||| |||||||    
T  34603348 agctcttgggaaaagggttggtgccttttgggga-agattcatggggttggaaaacacatgagtg 34603411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 34602834 - 34602672
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggg 110  Q
    |||||||| ||||||||||||| |||||||| |||||||||| ||||||| ||||| |||||||||||||||| |||||||||| |||||||||||||||    
T  34602834 caaaggagggaacttttagggt-tttagatattaaaggttgaaggtctttgggtgatgttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 34602736  T
Q  111 -gctcttgg-gaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtg 173  Q
     ||||||||  ||||||||||||||||||||||| |||||||||||||| | ||||| |||||||    
T  34602735 agctcttggtaaaagggttggtgccttttgggga-agattcatggggttggaaaacacatgagtg 34602672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 47255829 - 47255669
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  47255829 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagatgg 47255731  T
Q  110 ggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||||||    |||||||||||||||| |||||||| ||||| ||||||| |||| |||||    
T  47255730 ggctcttgggaaa---atggtgccttttgggga-agattcat-gggttgggaaacacatgattggag 47255669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 11348371 - 11348536
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||  ||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| ||||||| |||||||||| |||||||||||| ||    
T  11348371 caaaggatggaacttttagggt-tttagatactaagggttgagggtctttgggtgaggttcaaagtttcaagatgtgaatcttggagaaccaaaagaggg 11348469  T
Q  110 ggctcttgggaaagggt-tggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    ||||||||||||| ||| ||||||||||||| || |||||||||||||| | ||||| ||||||||||    
T  11348470 ggctcttgggaaaaggtctggtgccttttggaga-agattcatggggttggaaaacacatgagtggag 11348536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 13547584 - 13547419
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggg 110  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| | |||||||||||||    
T  13547584 caaaggagagaacttttagagt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggataaccaaaagaggg 13547486  T
Q  111 -gctcttg-ggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
     ||||||| | ||||||| ||||||||||| ||| | |||||||||||| | ||||| ||||||||||    
T  13547485 agctcttgtgaaaagggtcggtgccttttgagga-aaattcatggggttggaaaacacatgagtggag 13547419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 13549495 - 13549330
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggg 110  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| | |||||||||||||    
T  13549495 caaaggagagaacttttagagt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggataaccaaaagaggg 13549397  T
Q  111 -gctcttg-ggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
     ||||||| | ||||||| ||||||||||| ||| | |||||||||||| | ||||| ||||||||||    
T  13549396 agctcttgtgaaaagggtcggtgccttttgagga-aaattcatggggttggaaaacacatgagtggag 13549330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 37033564 - 37033403
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| ||     |||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  37033564 caaaggagggaacttttagggtttt-----actaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 37033470  T
Q  110 ggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||| ||||||||||||||||||| ||| ||||||||| |||| ||||||| ||||||||||    
T  37033469 ggctcttgggaaaagggttggtgccttttgagga-agattcatgaggttgggaaacacatgagtggag 37033403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 193285 - 193438
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    ||||||||| |||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||| || |||||||||| |||||||||||| ||    
T  193285 caaaggagataacttttagggt-tttagatattaaaggttgagggtctttcggtgaggttcaaagcttcatgatgtgaatcttggagaaccaaaagaggg 193383  T
Q  110 ggctctt-gggaaagggttggtgccttttggggacagattcatggggttaggaaaca 165  Q
    ||||||| |||||| |||||||||||||||||   |||||||||||||| |||||||    
T  193384 ggctcttggggaaaaggttggtgccttttggg--aagattcatggggttgggaaaca 193438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 37879406 - 37879241
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||  ||||| ||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||||| |||||||||| ||||| |||||| ||    
T  37879406 caaaggaaggaactgttagggt-tttagatactaaatgttgaggatctttgggtgaggttcaaagcttcaagatgtgaatcttggagaacaaaaagaggg 37879308  T
Q  110 ggctcttg-ggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||| | ||| ||||||||||||||||||| | |||||||||||| ||||||| ||||||||||    
T  37879307 ggctcttgtgaaaaaggttggtgccttttgggga-aaattcatggggttgggaaacacatgagtggag 37879241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 41135493 - 41135648
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagagg- 109  Q
    |||||||| ||| |||||  || ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||| |||||| ||||||||||||||     
T  41135493 caaaggagggaaattttaatgtatttagatactaaaggttgagggtctttgggtgaggttcaaaccttcaagatgtggatcttggagaaccaaaagagga 41135592  T
Q  110 ggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaaca 165  Q
     | | |||||| |||||||||||||||| |||| |||||||||||||| |||||||    
T  41135593 agattttgggagagggttggtgccttttagggagagattcatggggttgggaaaca 41135648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 47114845 - 47115009
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||| ||  |||||||| ||||| |||||||||||| |||||||||||||||||||||  |||||||||| |||||||||||| ||    
T  47114845 caaaggagggaacttttaaggc-tttagatattaaagattgagggtctttgggtgaggttcaaagcttcaagctgtgaatcttggagaaccaaaagaggg 47114943  T
Q  110 ggctcttgggaa-agggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||||| ||||||||| |||||||||   |||||||||||||| ||||||| |||| |||||    
T  47114944 ggctcttgggaacagggttggtaccttttggg--aagattcatggggttgggaaacacatgaatggag 47115009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 19754164 - 19754329
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| | ||||||||||||||| ||||||||| |||||||||||||||  || ||  ||||||||| | |||||| ||| ||    
T  19754164 caaaggagggaacttttagggt-tctagatactaaaggttaagggtctttgggtgaggttcaaagcaccatgatttgaatcttggaaaaccaagagaggg 19754262  T
Q  110 ggctcttg-ggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||| | ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  19754263 ggctcttgtgaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggag 19754329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 19752359 - 19752523
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||| ||| ||| ||||||||| ||||||||||||||||||| ||||||| |||||||||| |||| |||  | |||||||||| |||||||||||| ||    
T  19752359 caaatgagggaatttttagggt-tttagatactaaaggttgaaggtctttgggtgaggttctaagcgtcataatgtgaatcttggagaaccaaaagatgg 19752457  T
Q  110 ggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||  |||| ||||||||||||||||||| |||||||| | ||| ||||||| ||||||||||    
T  19752458 ggctcttatgaaaaggttggtgccttttgggga-agattcattgagttgggaaacacatgagtggag 19752523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 9109887 - 9109750
Alignment:
Q  21 aacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagagggg-ctcttggg 119  Q
    ||||||| |||| | || |||||||||||||||||| ||| ||||||||||||| |||||||| |||||||||| |||||||||| ||||| ||| ||||    
T  9109887 aacttttggggtatataaatactaaaggttgagggtatttgggtgaggttcaaaacttcaagatgtgaatcttggagaaccaaaaaaggggactcatggg 9109788  T
Q  120 aaagggttggtgccttttggggacagattcatggggtt 157  Q
    | ||||||| || |||||||||| ||||||||| ||||    
T  9109787 agagggttgatgtcttttggggagagattcatgaggtt 9109750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 170
Target Start/End: Original strand, 6808119 - 6808279
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgaggg-tcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-g 108  Q
    ||||||||  |||||||||  | |||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||||||||| ||||||||||||      
T  6808119 caaaggaggaaacttttagattttttagatactaaaggttgaggggtctttaggtgaggttcaaaacttcaagatgtgaatcttggagaaccaaaagatt 6808218  T
Q  109 gggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatga 170  Q
    |||||||| ||| ||  || ||| |||||||| | |||||||||||||| | ||||| ||||    
T  6808219 gggctctt-ggagagattttgtgtcttttgggaagagattcatggggttggaaaacacatga 6808279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 22079039 - 22079107
Alignment:
Q  43 taaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagagggg 111  Q
    ||||| |||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  22079039 taaagtttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttaaagaaccaaaagagggg 22079107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 16216966 - 16216860
Alignment:
Q  34 tttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggggctcttgggaaagggttggtgc 132  Q
    |||||| |||||||||| ||||||||| |||||  ||||||| ||||||| ||  ||||||||||||||||||| ||||||||| | |||||||||||||    
T  16216966 tttagaaactaaaggttaagggtctttgggtgatattcaaaggttcaagatgtatatcttgaagaaccaaaagagggggctcttcgaaaagggttggtgc 16216867  T
Q  133 cttttgg 139  Q
     ||||||    
T  16216866 attttgg 16216860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 31928281 - 31928208
Alignment:
Q  34 tttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga 107  Q
    |||||||||||||||||||| |||||| | |||||||||||||||||||| |||||||||  | ||||||||||    
T  31928281 tttagatactaaaggttgagagtctttggatgaggttcaaagcttcaagatgtgaatcttagaaaaccaaaaga 31928208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 6068290 - 6068445
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||||||||||||||||   ||| |  ||||| ||||||||||||| | |||| ||||||   | |||| ||||||||    ||||||||||| ||    
T  6068290 caaaggagagaacttttagggaacttaaaggctaaaagttgagggtctttggatgagattcaaatgatgaagacgtgaatctaagggaaccaaaagaggg 6068389  T
Q  110 ggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaaca 165  Q
    ||||||| ||||| |||||||| |||||||| | ||||||||  |||| |||||||    
T  6068390 ggctcttaggaaaaggttggtgtcttttgggaagagattcataaggttgggaaaca 6068445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 3331255 - 3331357
Alignment:
Q  50 tgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggggctcttgggaaagggttggtgccttttggggacagatt 148  Q
    ||||||||||| |||||| || |||   |||||| |||||||||  |||||||||||| |||||||||||||||||||| ||| | ||| |||| |||||    
T  3331255 tgagggtctttaggtgagatttaaatgatcaagatgtgaatcttagagaaccaaaagagggggctcttgggaaagggttcgtgtcgttttgggagagatt 3331354  T
Q  149 cat 151  Q
    |||    
T  3331355 cat 3331357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 171
Target Start/End: Complemental strand, 28318225 - 28318094
Alignment:
Q  42 ctaaaggttgagggtcttttggtgaggttcaaagct-tcaagaagtgaatcttgaagaaccaaaagag--gggctcttgggaaagggttggtgccttttg 138  Q
    ||||| ||||||| ||||| | |||| |||||||   |||||| |||||| ||| | |||||||||||  ||| ||||||||||||||| |||| |||||    
T  28318225 ctaaaagttgaggatctttggatgagtttcaaaggggtcaagatgtgaattttggataaccaaaagagaggggttcttgggaaagggttagtgcattttg 28318126  T
Q  139 gggacagattcatggggttaggaaacatatgag 171  Q
    |||| ||||||||||| | | ||||||||||||    
T  28318125 gggagagattcatgggatga-gaaacatatgag 28318094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 31926091 - 31926036
Alignment:
Q  120 aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    ||||||||||||||||||||||| ||||||||||| || |||||||  |||||||||    
T  31926091 aaagggttggtgccttttgggga-agattcatgggtttgggaaacacgtgagtggag 31926036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 12318890 - 12318844
Alignment:
Q  97 gaaccaaaagag-gggctcttgggaaagggttggtgccttttgggga 142  Q
    |||||||| ||| |||||||||||| |||||||||||||||||||||    
T  12318890 gaaccaaatgagagggctcttgggagagggttggtgccttttgggga 12318844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 38747124 - 38747052
Alignment:
Q  98 aaccaaaagaggggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatga 170  Q
    ||||||||  ||||||||||  |||||||||||||||||||| || || ||||| ||||| | ||||| ||||    
T  38747124 aaccaaaacgggggctcttgaaaaagggttggtgccttttggagagaggttcatagggttggaaaacacatga 38747052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 42435486 - 42435321
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    ||||||||  |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  42435486 caaaggaggaaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 42435388  T
Q  110 ggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||| ||| |||||||| |||||||||| |||||||||||||| |||||||||||| |||||    
T  42435387 ggctcttgggaaaaaggttggtgacttttgggga-agattcatggggttgggaaacatatgaatggag 42435321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 172
Target Start/End: Complemental strand, 3000016 - 2999854
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||| |||||||||||| ||    
T  3000016 caaaggagagaacttttagggaatttagatactaaaggttgagggtctttgggtgatgttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 2999917  T
Q  110 ggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagt 172  Q
    || |||||||| | |||||||| |||||||||| |||||||||||| |  |||||| ||||||    
T  2999916 ggttcttgggatatggttggtgtcttttggggaaagattcatggggatgagaaacacatgagt 2999854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 22976207 - 22976353
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagagg- 109  Q
    |||||||| |||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||     
T  22976207 caaaggagtgaacttttagagt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagga 22976305  T
Q  110 ggctcttgg-gaaagggttggtgccttttggggacagattcatggggtt 157  Q
    |||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  22976306 ggctcttggaaaaagggttggtgccttttgggga-agattcatggggtt 22976353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 11383659 - 11383811
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  11383659 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 11383757  T
Q  110 ggctcttg-ggaaagggttggtgccttttggggacagattcatggggttaggaaa 163  Q
    |||| ||| | ||||||||||||||||||| ||| |||||||||||||| |||||    
T  11383758 ggctattgtgaaaagggttggtgccttttgagga-agattcatggggttgggaaa 11383811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 4283219 - 4283331
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||| |||||||||||| ||    
T  4283219 caaaggagagaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtggatcttggagaaccaaaagaggg 4283317  T
Q  110 ggctcttgggaaag 123  Q
    |||| |||||||||    
T  4283318 ggcttttgggaaag 4283331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 44353468 - 44353630
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| ||||||||   |||||||| ||||| |||||| ||    
T  44353468 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggtttaaaacttcaaga---gaatcttggagaactaaaagaggg 44353563  T
Q  110 ggctcttgggaa-agggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||| ||| |||||||||||||||||| || |||||||||||||| | ||||| ||||||||||    
T  44353564 ggctcttgtgaagagggttggtgccttttggaga-agattcatggggttggaaaacacatgagtggag 44353630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 36 - 173
Target Start/End: Original strand, 40328476 - 40328614
Alignment:
Q  36 tagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggggctcttggg-aaagggttggtgcc 133  Q
    |||||||||||| || ||||||||| ||||||||||||||||||| || |||||||||| |||||||||||| |||| ||||||| ||||||||||||||    
T  40328476 tagatactaaagatttagggtctttgggtgaggttcaaagcttcatgatgtgaatcttggagaaccaaaagagggggttcttgggaaaagggttggtgcc 40328575  T
Q  134 ttttggggacagattcatggggttaggaaacatatgagtg 173  Q
    |||| |||| |||||||||||| | ||||||| |||||||    
T  40328576 ttttaggga-agattcatggggatgggaaacacatgagtg 40328614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 3846313 - 3846153
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggg 110  Q
    ||||||||| |||||| |||||  || || ||||||||||||||||  ||  ||||| ||||||| ||||  | ||||||||||||||||||||||| |     
T  3846313 caaaggagaaaactttcagggtactttgaaactaaaggttgagggttcttgagtgagattcaaaggttcataatgtgaatcttgaagaaccaaaagaaga 3846214  T
Q  111 gctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgag 171  Q
    |||||||| |||| ||||||| |||||||||| |||||||||||||| ||||||| |||||    
T  3846213 gctcttggaaaagagttggtgtcttttggggagagattcatggggttgggaaacacatgag 3846153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 40221427 - 40221583
Alignment:
Q  20 gaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggggctcttgg 118  Q
    ||||||||||||| ||| |||||||||||| || ||||||| | ||||||| | | |||||||| |||||||||  |||||||||| | |||||||||||    
T  40221427 gaacttttagggttttt-gatactaaaggtggaaggtctttggatgaggtttagaacttcaagatgtgaatcttcgagaaccaaaatagggggctcttgg 40221525  T
Q  119 gaaa-gggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||| ||||| |||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  40221526 gaaaggggttagtgccttttgggga-agattcatggggttgggaaacacatgagtggag 40221583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 40585397 - 40585545
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagag-g 109  Q
    ||||||| | ||||||||| || ||||||||||||||||| || |||||| | |||||||||||||||||||| |||||| ||  |||| |||||||| |    
T  40585397 caaaggaaataacttttagagtatttagatactaaaggttaagagtctttggttgaggttcaaagcttcaagatgtgaatatttgagaatcaaaagagtg 40585496  T
Q  110 ggctc-ttgggaaagggttggtgccttttggggacagattcatggggtt 157  Q
    ||||| || ||| ||||||| || ||||||| || ||||||||||||||    
T  40585497 ggctcttttggagagggttgatgtcttttggtgagagattcatggggtt 40585545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 3817829 - 3817681
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagag-- 108  Q
    ||||||||| ||||||||||||  ||||| |||||||||||||||| | |  || |  ||||||| || |||| | || ||||||||||||||||||       
T  3817829 caaaggagaaaacttttagggtacttagaaactaaaggttgagggtttctgagtaaa-ttcaaaggttgaagatgggattcttgaagaaccaaaagaatt 3817731  T
Q  109 -gggctcttgggaaagggttggtgccttttggggacagattcatggggtt 157  Q
     |||||||||| |||||||||||||||||||| || ||||||||||||||    
T  3817730 agggctcttggaaaagggttggtgccttttggagaaagattcatggggtt 3817681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 20686552 - 20686456
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagag 108  Q
    |||||||| ||||||| |||||  |||||||||||| ||||||| ||||| ||||| |||||||||||||||| |||||||||| | |||||||||||    
T  20686552 caaaggagggaactttcagggtacttagatactaaatgttgaggatcttt-ggtgaagttcaaagcttcaagatgtgaatcttggataaccaaaagag 20686456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 40535538 - 40535652
Alignment:
Q  24 ttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggggctcttgggaaa 122  Q
    ||||||||| |||||||||||||| |||| ||||||| |||  ||||||||| ||||||  ||| |||||  |||||||||||| |||| ||||| ||||    
T  40535538 ttttagggtatttagatactaaagattgatggtctttgggt--ggttcaaagtttcaagttgtggatcttttagaaccaaaagagggggttcttgagaaa 40535635  T
Q  123 gggttggtgccttttgg 139  Q
    |||||| ||||||||||    
T  40535636 gggttgatgccttttgg 40535652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 10020150 - 10020254
Alignment:
Q  49 ttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggggctcttgggaaagggttggtg-ccttttggggacaga 146  Q
    |||||||||||| |||||| ||||||   |||| | |||||||||  |||||||||||| |||||||||||||||||||| ||| | |||| |||| |||    
T  10020150 ttgagggtctttaggtgagattcaaatgatcaatatgtgaatcttagagaaccaaaagagggggctcttgggaaagggttcgtgtcatttttgggagaga 10020249  T
Q  147 ttcat 151  Q
    |||||    
T  10020250 ttcat 10020254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 10101581 - 10101513
Alignment:
Q  85 gtgaatcttgaagaaccaaaagagg-ggctcttgggaaagggttggtgccttttggggacagattcatg 152  Q
    ||||| |||| |||||||||||||| ||||||||||||||||||| ||| ||||||| | |||||||||    
T  10101581 gtgaaccttggagaaccaaaagaggaggctcttgggaaagggttgctgcattttgggaagagattcatg 10101513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 28461307 - 28461375
Alignment:
Q  85 gtgaatcttgaagaaccaaaagaggg-gctcttgggaaagggttggtgccttttggggacagattcatg 152  Q
    |||||||||| ||||||||||||||  |||||| ||||| ||||||| ||||||||||| |||||||||    
T  28461307 gtgaatcttggagaaccaaaagaggaagctcttaggaaatggttggttccttttggggatagattcatg 28461375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 19141418 - 19141378
Alignment:
Q  269 tgttaatttattaaaaggcttattttattatttaatataat 309  Q
    |||| |||||||||  |||||||||||||||||||||||||    
T  19141418 tgttgatttattaagtggcttattttattatttaatataat 19141378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 3809204 - 3809038
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga--g 108  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||  |    
T  3809204 caaaggagggaacttttagggt-tttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 3809106  T
Q  109 gggctcttg-ggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    ||||||||| | ||||||||||| |||||||| || |||||||||||||| ||||||| ||||||||||    
T  3809105 gggctcttgtgaaaagggttggttccttttggaga-agattcatggggttgggaaacacatgagtggag 3809038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 5043301 - 5043465
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagag-g 109  Q
    |||||||| ||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||| | |||||||| ||||||||||||| |    
T  5043301 caaaggagggaacttttagggt-tttagatactaaagattgagggtctttgggtgaggttcaaagcttcaagatgagaatcttggagaaccaaaagagag 5043399  T
Q  110 ggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||| |||||||||||||||||||||   |||||||||||||| ||||||| ||||||||||    
T  5043400 ggctcttgggaaaagggttggtgccttttggg--aagattcatggggttgggaaacacatgagtggag 5043465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 2973435 - 2973275
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| | ||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  2973435 caaaggagggaacttttagggtttgtagatactaaaggttgaaggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggg 2973336  T
Q  110 ggctcttg-ggaaagggttggtgccttttggggacagattcatggggttaggaaacatatga 170  Q
    |||||||| | ||||||||||||| |||| |||| |||||||||||||| ||||||| ||||    
T  2973335 ggctcttgtgaaaagggttggtgcttttttggga-agattcatggggttgggaaacacatga 2973275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 37 - 179
Target Start/End: Complemental strand, 603550 - 603407
Alignment:
Q  37 agatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggggctcttg-ggaaagggttggtgcct 134  Q
    ||||| |||||||||||||||||| | |||||||||||||||||||| |||||||||| |||||||||||| |||||||||| |||||||||||||||||    
T  603550 agatagtaaaggttgagggtctttggatgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgaggaaagggttggtgcct 603451  T
Q  135 tttggggacagattcatggggttaggaaacatatgagtggagtgt 179  Q
    ||||| || |||||||||||||| ||||||| |||||||||||||    
T  603450 tttggaga-agattcatggggttgggaaacacatgagtggagtgt 603407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 17762661 - 17762827
Alignment:
Q  12 aaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggg 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| |||||| ||||||||| |||||||||| |||||||||||| |||    
T  17762661 aaaggagagaacttttagggt-tttagatactaaaggttgaggatctttgggtgaagttcaaggcttcaagatgtgaatcttggagaaccaaaagagggg 17762759  T
Q  111 gctcttg-ggaaagggttggtgcctttt-ggggacagattcatggggttaggaaacatatgagtggag 176  Q
    ||||||| | ||||| |||||||||||| ||||  |||||||||||||| ||||||| ||||||||||    
T  17762760 gctcttgtgaaaaggtttggtgccttttgggggttagattcatggggttgggaaacacatgagtggag 17762827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 21593347 - 21593504
Alignment:
Q  19 agaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggggctctt- 116  Q
    |||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||| || |||| |||||||||| |||||||||||| |||||||||     
T  21593347 agaacttttagggt-tttagatactaaatgttgagggtctttgggtgaggttcaaagatttaagatgtgaatcttggagaaccaaaagagggggctcttg 21593445  T
Q  117 gggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    ||||||||||||||||||||||| || |||||||||||||| | ||||| ||||||||||    
T  21593446 gggaaagggttggtgccttttggaga-agattcatggggttggaaaacacatgagtggag 21593504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 25072858 - 25073012
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggg 110  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||  |||||| |||| |||    
T  25072858 caaagaagtgaacttttagggtatttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatctttgagaacccaaaggggg 25072957  T
Q  111 gctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaaca 165  Q
    |||||||| |||||| | |||||| ||||| | |||||||| ||||| |||||||    
T  25072958 gctcttggaaaagggattgtgcctcttgggaagagattcatagggtttggaaaca 25073012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 26800443 - 26800608
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    ||||||||| |||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||| || | |||||||||| ||    
T  26800443 caaaggagaaaacttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtggatcatggataaccaaaagaggg 26800542  T
Q  110 ggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||||| ||| ||||||||||||||||||| |||||||| ||| | ||||||| ||||||||||    
T  26800543 ggctcttgggaaaaaggttggtgccttttgggga-agattcat-gggatgggaaacacatgagtggag 26800608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 22425321 - 22425174
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggg 110  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||||||||| |||| |||||| |||||||||| |||||||||| |||||||||||||||    
T  22425321 caaaggagggaacttt-agggt-tttagatactaaaggttgagggtctttgggtgtggttcagagcttcaagatgtgaatcttggagaaccaaaagaggg 22425224  T
Q  111 g---ctcttggga-aagggttggtgccttttggggacagattcatggggtt 157  Q
    |   ||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  22425223 gggcctcttgggataagggttggtgcattttgggga-agattcatggggtt 22425174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 26830619 - 26830459
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagagg- 109  Q
    |||||||| ||||||||||||| |||||||| |||||| |||||||||||  || ||||| ||| |||||||| |||||||||| ||||||||||||||     
T  26830619 caaaggagggaacttttagggt-tttagataataaaggctgagggtctttgagtaaggtttaaaacttcaagatgtgaatcttggagaaccaaaagagga 26830521  T
Q  110 ggctcttggg-aaagggttggtgccttttggggacagattcatggggttaggaaacatatgag 171  Q
    | |||||||| ||| |||||||||||||||| || |||||||||||||| ||||||| |||||    
T  26830520 gtctcttgggaaaaaggttggtgccttttggaga-agattcatggggttgggaaacagatgag 26830459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 17757789 - 17757922
Alignment:
Q  46 aggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagagggg-ctcttgggaaa-gggttggtgccttttggggac 143  Q
    ||||||| ||||||| |||||| |||||||||| |||| |||||| ||| |||||||||| ||||| |||||| |||| |||||||||| ||||||||      
T  17757789 aggttgatggtctttgggtgagattcaaagcttgaagatgtgaatgttggagaaccaaaatagggggctcttgtgaaaagggttggtgcattttgggggt 17757888  T
Q  144 -agattcatggggttaggaaacatatgagtggag 176  Q
     |||||||||||||| ||||||| ||||||||||    
T  17757889 tagattcatggggttgggaaacacatgagtggag 17757922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 15703587 - 15703632
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||||    
T  15703587 gtgaggtgttgttgatttattaagaggcttattttattatttaata 15703632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 19771736 - 19771781
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||||    
T  19771736 gtgaggtgttgttgatttattaagaggcttattttattatttaata 19771781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 80778 - 80613
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| ||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||  ||||||||| |||||||||||| ||    
T  80778 caaaggagggaacttttagggt-tttagatactagaggttgagggtctttgggtgaggttcaaagcttcaagatttgaatcttggagaaccaaaagaggg 80680  T
Q  110 ggctctt-gggaaagggttggtgccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    |||||||  | ||||||||||||||||||||||| |||||||||||||| ||||||| ||||| ||||    
T  80679 ggctcttatgaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagcggag 80613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 490940 - 490785
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-gg 109  Q
    |||||||| || |||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| | ||    
T  490940 caaaggagggagcttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaaaaggg 490841  T
Q  110 ggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaaca 165  Q
    ||||||| ||| ||||||||||||||| || || ||||||||||| || |||||||    
T  490840 ggctctttggagagggttggtgcctttaggtgagagattcatgggattgggaaaca 490785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 1901 - 1759
Alignment:
Q  11 caaaggagagaacttttagggtgtttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaagaggg 110  Q
    |||| ||||||||||||||||| ||||||||||||||||||| ||||||| |||||| | ||||||||||||| ||||||||||||||||||||||||||    
T  1901 caaatgagagaacttttagggtatttagatactaaaggttgaaggtctttgggtgagctccaaagcttcaagatgtgaatcttgaagaaccaaaagaggg 1802  T
Q  111 g-ctcttgggaaagggttggtgccttttggggacagattcatg 152  Q
    | ||||||||  ||| |||||| |||||| ||| |||||||||    
T  1801 gactcttgggcgaggcttggtgtcttttgtggagagattcatg 1759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 34 - 176
Target Start/End: Complemental strand, 18474 - 18331
Alignment:
Q  34 tttagatactaaaggttgagggtcttttggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga-ggggctcttg-ggaaagggttggtg 131  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||| ||||| |||||| |||||||||| | ||||||||||||    
T  18474 tttagatactaaaggttgcgggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaacaaaaagagggggctcttgtgaaaagggttggtg 18375  T
Q  132 ccttttggggacagattcatggggttaggaaacatatgagtggag 176  Q
    ||||||||||  ||||||||| |||| | ||||| ||||||||||    
T  18374 ccttttgggggaagattcatgaggtt-gaaaacacatgagtggag 18331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0292 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 8552 - 8507
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||||    
T  8552 gtgaggtgttgttgatttattaagaggcttattttattatttaata 8507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 24154 - 24109
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||||    
T  24154 gtgaggtgttgttgatttattaagaggcttattttattatttaata 24109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 22786 - 22741
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||||    
T  22786 gtgaggtgttgttgatttattaagaggcttattttattatttaata 22741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 303
Target Start/End: Complemental strand, 129246 - 129203
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaa 303  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||    
T  129246 gtgaggtgttgttgatttattaagaggcttattttattatttaa 129203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 14248 - 14293
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    |||||||  |||| ||||||||| ||||||||||||||||||||||    
T  14248 gtgaggtattgttgatttattaagaggcttattttattatttaata 14293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 7353 - 7308
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    |||||||| |||| |||||||||  |||||||||||||||||||||    
T  7353 gtgaggtgttgttgatttattaagtggcttattttattatttaata 7308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 35965 - 35920
Alignment:
Q  260 gtgaggtgctgttaatttattaaaaggcttattttattatttaata 305  Q
    |||||||| |||| ||||||||| || |||||||||||||||||||    
T  35965 gtgaggtgttgttgatttattaagagacttattttattatttaata 35920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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