View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3909_low_15 (Length: 288)

Name: NF3909_low_15
Description: NF3909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3909_low_15
NF3909_low_15
[»] chr5 (8 HSPs)
chr5 (21-127)||(25222866-25222973)
chr5 (21-127)||(25287022-25287129)
chr5 (160-216)||(25222973-25223029)
chr5 (160-216)||(25287129-25287185)
chr5 (227-267)||(25223489-25223529)
chr5 (227-267)||(25287645-25287685)
chr5 (148-216)||(37155201-37155269)
chr5 (226-267)||(37152660-37152701)


Alignment Details
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 25222866 - 25222973
Alignment:
Q  21 agggtgtatgaggttaggaaaaagggtggaaaggcagaagggactaattttc-tttttatcaaataaatgtgcaccttaaaagtttatgatacagctatt 119  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| | | ||||||||||||||||||||    
T  25222866 agggtgaatgaggttaggaaaaagggtggagaggcagaagggactaattttcttttttatcaaataaatgtgcacgtcacaagtttatgatacagctatt 25222965  T
Q  120 taagagga 127  Q
    ||||||||    
T  25222966 taagagga 25222973  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 25287022 - 25287129
Alignment:
Q  21 agggtgtatgaggttaggaaaaagggtggaaaggcagaagggactaattttc-tttttatcaaataaatgtgcaccttaaaagtttatgatacagctatt 119  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| | | ||||||||||||||||||||    
T  25287022 agggtgaatgaggttaggaaaaagggtggagaggcagaagggactaattttcttttttatcaaataaatgtgcacgtcacaagtttatgatacagctatt 25287121  T
Q  120 taagagga 127  Q
    ||||||||    
T  25287122 taagagga 25287129  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 25222973 - 25223029
Alignment:
Q  160 aataccaccaatttgcatgctatcaatgtcactaacagaaactctcaaactatccat 216  Q
    |||||||| | |||||||||||||||||||||||||||||| |||||||||||||||    
T  25222973 aataccactattttgcatgctatcaatgtcactaacagaaaatctcaaactatccat 25223029  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 25287129 - 25287185
Alignment:
Q  160 aataccaccaatttgcatgctatcaatgtcactaacagaaactctcaaactatccat 216  Q
    |||||||| | |||||||||||||||||||||||||||||| |||||||||||||||    
T  25287129 aataccactattttgcatgctatcaatgtcactaacagaaaatctcaaactatccat 25287185  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 25223489 - 25223529
Alignment:
Q  227 ctcttattttcaaatacttgttaaaagtcccttaatattta 267  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  25223489 ctcttattttcaaatacttcttaaaagtcccttaatattta 25223529  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 25287645 - 25287685
Alignment:
Q  227 ctcttattttcaaatacttgttaaaagtcccttaatattta 267  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  25287645 ctcttattttcaaatacttcttaaaagtcccttaatattta 25287685  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 37155269 - 37155201
Alignment:
Q  148 ttgtgagactaaaataccaccaatttgcatgctatcaatgtcactaacagaaactctcaaactatccat 216  Q
    ||||||| ||||||||||| || ||| || || |||||||| ||||||||||| || ||||||||||||    
T  37155269 ttgtgaggctaaaataccagcatttttcaggccatcaatgttactaacagaaaatcccaaactatccat 37155201  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 37152701 - 37152660
Alignment:
Q  226 gctcttattttcaaatacttgttaaaagtcccttaatattta 267  Q
    ||||||||||| ||||||||  ||||||||||||||||||||    
T  37152701 gctcttattttaaaatacttcataaaagtcccttaatattta 37152660  T

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