View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3909_low_2 (Length: 562)
Name: NF3909_low_2
Description: NF3909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3909_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 46690522 - 46690262
Alignment:
| Q |
18 |
ttgttttagtcaaactctagtttgtttgttgagacaatcatgcgtaacaaacaaatcagttttcagttttgaagataactaaacgtggaactggaatcct |
117 |
Q |
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| T |
46690522 |
ttgttttagtcaaactctagtttgtttgttgagacaatcatgcgtaacaaacaaatcagttttcagttttgaagataactaaacgtggaactggaatcct |
46690423 |
T |
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| Q |
118 |
agttattgtaggatatgttttctagaaagatagtcaagtgttagggttactttaaatccaactaatactatccagttgtgtttccttgaactctctgaag |
217 |
Q |
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| T |
46690422 |
agttattgtaggatatgttttctagaaagatagtcaagtgttagggttactttaaatccaactaatactatccacttgtgtttccttgaactctctgaag |
46690323 |
T |
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| Q |
218 |
atggtggaacagccacacgatcagaagaactcctttgtttccatgtcgtcacaagaacagg |
278 |
Q |
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| T |
46690322 |
atggtggaacagccacacgatcagaataactcctttgtttccatgtcgtcacaagaacagg |
46690262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 375 - 552
Target Start/End: Complemental strand, 46690168 - 46689991
Alignment:
| Q |
375 |
gagatgaaacacatgaataatcgataccaattttatatgttttaaaacgatgaagggtttaatcaaaaacgaaattcagttttatactaaatatgcagat |
474 |
Q |
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| T |
46690168 |
gagatgaaacacatgaataatcgataccaattttatatgttttaaaacgatgaagggtttaatcaaaaacgaaattcagttttatactgaatatgcagat |
46690069 |
T |
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| Q |
475 |
ttagtttgttcatgtattaattaagcaagatttccttgtatattgtgtgcaaataattgaggattcgttctacctttg |
552 |
Q |
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| T |
46690068 |
ttagtttgttcatgtattaattaagcaagatttccttgtatattgtgtgcaaataattgaggattcgttctacctttg |
46689991 |
T |
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