View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3909_low_20 (Length: 238)

Name: NF3909_low_20
Description: NF3909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3909_low_20
NF3909_low_20
[»] chr8 (7 HSPs)
chr8 (66-222)||(24489415-24489562)
chr8 (54-112)||(20506975-20507033)
chr8 (55-212)||(25923701-25923850)
chr8 (69-218)||(24525313-24525454)
chr8 (133-213)||(30078507-30078587)
chr8 (161-200)||(25031187-25031226)
chr8 (164-213)||(26034416-26034465)
[»] chr4 (2 HSPs)
chr4 (155-215)||(17772788-17772848)
chr4 (31-80)||(17772675-17772725)


Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 66 - 222
Target Start/End: Original strand, 24489415 - 24489562
Alignment:
Q  66 tttgtactattattgcaccatcactttttgttatcatgtacaagcagtggccacttccttcatgcccgcccctgttataaataattcaaaattccgcaat 165  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||| |||| |        |||||||||||||||||||||||||||||||||    
T  24489415 tttgtactattattgcaccatcactgtt-gttatcatgtacaagcagtggccgcttcat--------gcccctgttataaataattcaaaattccgcaat 24489505  T
Q  166 ttacatcatctaaagttcattctcccttgcttcaattcaaatcttctgctcaaagtg 222  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  24489506 ttacatcatctaaagttcattctccctttcttcaactcaaatcttctgctcaaagtg 24489562  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 20506975 - 20507033
Alignment:
Q  54 tatatatgtagttttgtactattattgcaccatcactttttgttatcatgtacaagcag 112  Q
    ||||||||||||||||||||| |||||  ||||||||| ||||||||||||||||||||    
T  20506975 tatatatgtagttttgtactaatattgggccatcacttgttgttatcatgtacaagcag 20507033  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 212
Target Start/End: Original strand, 25923701 - 25923850
Alignment:
Q  55 atatatgtagttttgtactattattgcaccatcactttttgttatcatgtacaagcagtggccacttccttcatgcccgcccctgttataaataattcaa 154  Q
    ||||||| |||||||||||  |||||  |||| |||| || |||||||||||||||||||| |||||| |        ||||||||| || || || ||     
T  25923701 atatatgcagttttgtactgatattgttccattacttgtttttatcatgtacaagcagtggacacttcat--------gcccctgttctagattatccag 25923792  T
Q  155 aattccgcaatttacatcatctaaagttcattctcccttgcttcaattcaaatcttct 212  Q
    |||| ||| | ||| ||||| ||||||||||||||||||||||||| || ||||||||    
T  25923793 aatttcgccaattaaatcatataaagttcattctcccttgcttcaactcgaatcttct 25923850  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 218
Target Start/End: Original strand, 24525313 - 24525454
Alignment:
Q  69 gtactattattgcaccatcactttttgttatcatgtacaagcagtggccacttccttcatgcccgcccctgttataaataattcaaaattccgcaattta 168  Q
    |||||| |||||  ||||||||| |||||||||||||||| ||||||||||||| ||        ||| |||| ||||  || || | || ||||| |||    
T  24525313 gtactaatattgtgccatcacttgttgttatcatgtacaaccagtggccacttcatt--------cccatgttctaaactatccagagtttcgcaaatta 24525404  T
Q  169 catcatctaaagttcattctcccttgcttcaattcaaatcttctgctcaa 218  Q
     ||| ||||||||||||||| || ||||| || |||||||||||||||||    
T  24525405 gatcgtctaaagttcattcttccctgctttaactcaaatcttctgctcaa 24525454  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 30078507 - 30078587
Alignment:
Q  133 gcccctgttataaataattcaaaattccgcaatttacatcatctaaagttcattctcccttgcttcaattcaaatcttctg 213  Q
    ||||||||| ||||| || || |||| |||||||||  |||||||||||||||||| || |||||||| || |||||||||    
T  30078507 gcccctgttctaaattatccagaatttcgcaatttatttcatctaaagttcattcttccctgcttcaactcgaatcttctg 30078587  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 25031226 - 25031187
Alignment:
Q  161 gcaatttacatcatctaaagttcattctcccttgcttcaa 200  Q
    |||||||||||||||||||||||||||| || ||||||||    
T  25031226 gcaatttacatcatctaaagttcattcttccctgcttcaa 25031187  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 26034416 - 26034465
Alignment:
Q  164 atttacatcatctaaagttcattctcccttgcttcaattcaaatcttctg 213  Q
    ||||||||||||| ||||||||||| || || ||||| ||||||||||||    
T  26034416 atttacatcatctgaagttcattcttccatgtttcaactcaaatcttctg 26034465  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 17772788 - 17772848
Alignment:
Q  155 aattccgcaatttacatcatctaaagttcattctcccttgcttcaattcaaatcttctgct 215  Q
    |||| ||||||||| ||||||||||||||||||| || |||||||| || |||||||||||    
T  17772788 aatttcgcaatttaaatcatctaaagttcattcttccctgcttcaactcgaatcttctgct 17772848  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 17772675 - 17772725
Alignment:
Q  31 ttattagtatggtttatatctatt-atatatgtagttttgtactattattg 80  Q
    |||||| |||||||||||| |||| |||||||||||||||||||| |||||    
T  17772675 ttattattatggtttatatgtatttatatatgtagttttgtactaatattg 17772725  T

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