View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3909_low_3 (Length: 544)

Name: NF3909_low_3
Description: NF3909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3909_low_3
NF3909_low_3
[»] chr3 (11 HSPs)
chr3 (281-544)||(23222147-23222381)
chr3 (134-232)||(8936054-8936152)
chr3 (160-229)||(43178610-43178679)
chr3 (161-233)||(1294907-1294979)
chr3 (161-236)||(42388741-42388816)
chr3 (162-236)||(36563060-36563134)
chr3 (160-240)||(50175353-50175433)
chr3 (165-232)||(26841307-26841373)
chr3 (165-236)||(36545183-36545254)
chr3 (162-236)||(42411037-42411111)
chr3 (166-232)||(52397399-52397465)
[»] chr5 (13 HSPs)
chr5 (111-255)||(21067598-21067743)
chr5 (112-255)||(28988341-28988486)
chr5 (162-233)||(19187144-19187215)
chr5 (161-231)||(39753317-39753387)
chr5 (165-240)||(38282494-38282569)
chr5 (162-235)||(36603697-36603770)
chr5 (165-240)||(1179945-1180020)
chr5 (134-210)||(14122928-14123004)
chr5 (136-233)||(24233180-24233277)
chr5 (118-236)||(36974030-36974148)
chr5 (185-236)||(6677086-6677137)
chr5 (186-236)||(12383956-12384006)
chr5 (162-234)||(39031668-39031739)
[»] chr1 (10 HSPs)
chr1 (111-240)||(45484990-45485119)
chr1 (161-255)||(32022615-32022709)
chr1 (111-233)||(48611679-48611802)
chr1 (111-236)||(19940549-19940674)
chr1 (162-255)||(34663092-34663185)
chr1 (165-236)||(4941199-4941270)
chr1 (162-236)||(1408620-1408694)
chr1 (165-240)||(40605156-40605228)
chr1 (179-254)||(48768286-48768361)
chr1 (162-236)||(46289803-46289877)
[»] chr8 (8 HSPs)
chr8 (113-236)||(40995773-40995897)
chr8 (111-255)||(9799200-9799345)
chr8 (110-255)||(7222798-7222939)
chr8 (134-236)||(15111845-15111947)
chr8 (165-232)||(45397512-45397578)
chr8 (162-236)||(12000143-12000217)
chr8 (160-226)||(885706-885774)
chr8 (160-240)||(27415255-27415335)
[»] chr4 (9 HSPs)
chr4 (165-236)||(27756471-27756542)
chr4 (111-234)||(19328824-19328948)
chr4 (165-236)||(3427867-3427938)
chr4 (160-234)||(3913655-3913729)
chr4 (165-223)||(25474657-25474715)
chr4 (165-236)||(43159856-43159927)
chr4 (162-223)||(4687364-4687425)
chr4 (165-229)||(20032924-20032989)
chr4 (173-229)||(46871305-46871361)
[»] scaffold0272 (1 HSPs)
scaffold0272 (115-255)||(6089-6230)
[»] chr2 (10 HSPs)
chr2 (162-233)||(9521066-9521137)
chr2 (113-234)||(16634422-16634544)
chr2 (165-229)||(3037421-3037485)
chr2 (102-255)||(27322731-27322882)
chr2 (166-240)||(6983185-6983259)
chr2 (161-234)||(9116404-9116477)
chr2 (161-212)||(15371435-15371486)
chr2 (194-235)||(24138011-24138052)
chr2 (179-236)||(25627402-25627459)
chr2 (112-148)||(35501506-35501542)
[»] chr7 (6 HSPs)
chr7 (160-255)||(30486950-30487045)
chr7 (161-233)||(47903887-47903957)
chr7 (165-236)||(42468949-42469020)
chr7 (162-236)||(37720555-37720629)
chr7 (162-236)||(28710392-28710466)
chr7 (160-232)||(15972134-15972206)
[»] scaffold0316 (1 HSPs)
scaffold0316 (165-236)||(1286-1357)
[»] chr6 (2 HSPs)
chr6 (165-235)||(17170676-17170746)
chr6 (111-151)||(7246638-7246678)


Alignment Details
Target: chr3 (Bit Score: 124; Significance: 2e-63; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 281 - 544
Target Start/End: Original strand, 23222147 - 23222381
Alignment:
Q  281 taaatttatacaatcaatcatatccataggtccaca--ttaaacaaaacgacatatactaattaattttgctaattcagaacaagcctttaatttcccac 378  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||| ||||||||||||||||            
T  23222147 taaatttatacaatcaatcatatccataggtccacacattaaacaaaacgacatatactaattatttttgctaatccagaacaagcctttaa-------- 23222238  T
Q  379 gacatccaacttgctttctgccccaacctctttactaattattttttctagttctcctcttgtttggctaagcataattgataagttcccgatcatccat 478  Q
       ||||||| ||||| |||||||||| ||||||||||||||||||                    ||| ||||||||||||||||||||||||||||||    
T  23222239 ---atccaacctgcttcctgccccaacttctttactaattattttt--------------------gctgagcataattgataagttcccgatcatccat 23222315  T
Q  479 gaccaggagcataattgtggccgtgtgctaaatcatcagtaacataatggaagcttccatctaaat 544  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23222316 gaccaggagcataattgtggccgtgtgctaaatcatcagtaacataacggaagcttccatctaaat 23222381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 134 - 232
Target Start/End: Original strand, 8936054 - 8936152
Alignment:
Q  134 ggcactggttaaggaaactnnnnnnnggaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatactt 232  Q
    |||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||  ||||||| ||||| ||||||||||||||||    
T  8936054 ggcactggttaaggaaacttaaaaaaggaagttttaaaataaaagtaacactttttatgcttttcaagggttgacagcacaagtttcaatgtaatactt 8936152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 43178679 - 43178610
Alignment:
Q  160 ggaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaata 229  Q
    |||||||||||||| ||||||||| ||||||| ||||| |||||||||||  ||||||||||||||||||    
T  43178679 ggaagttttaaaataaaagtaacattttttatacttttcaaaagttgacagtacaaatttcaatgtaata 43178610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 1294907 - 1294979
Alignment:
Q  161 gaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatactta 233  Q
    ||||||||||||||||||||||| |||||||| || | || || ||||| |||||||||||||||||||||||    
T  1294907 gaagttttaaaatgaaagtaacattttttatgtttatgaagagctgacagcacaaatttcaatgtaatactta 1294979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 42388816 - 42388741
Alignment:
Q  161 gaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttacta 236  Q
    |||||||||| |||||| |||||||||||||| |||| ||||||||||| |||||||| ||||  |||||||||||    
T  42388816 gaagttttaagatgaaaataacactttttatgtttttgaaaagttgacagcacaaattccaatacaatacttacta 42388741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 36563134 - 36563060
Alignment:
Q  162 aagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttacta 236  Q
    |||||||||| ||||| ||||||||||||||||||| |  |||||||| ||||| || ||||  |||||||||||    
T  36563134 aagttttaaagtgaaaataacactttttatgcttttgaggagttgacatcacaagttacaatacaatacttacta 36563060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 50175433 - 50175353
Alignment:
Q  160 ggaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttactatatt 240  Q
    |||| ||||||| | ||| ||||| |||||||| |||| |  ||||||||||||||||| ||||| ||||||| |||||||    
T  50175433 ggaaattttaaagtaaaaataacaatttttatgttttttaggagttgacaacacaaattccaatgcaatactttctatatt 50175353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 26841307 - 26841373
Alignment:
Q  165 ttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatactt 232  Q
    ||||||| | ||| |||||||||||||| |||||| | ||||||||| ||||||||||||||| ||||    
T  26841307 ttttaaagtaaaaataacactttttatgattttaaga-gttgacaacccaaatttcaatgtaaaactt 26841373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 36545183 - 36545254
Alignment:
Q  165 ttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttacta 236  Q
    ||||||| ||||| ||||||||||||||||||| |  |||||||| ||||| || ||||  |||||||||||    
T  36545183 ttttaaagtgaaaataacactttttatgcttttgaggagttgacatcacaagttacaatacaatacttacta 36545254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 42411111 - 42411037
Alignment:
Q  162 aagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttacta 236  Q
    ||||||||| || ||| ||||| |||||||| |||| |||| |||||||| ||| || ||||| |||||||||||    
T  42411111 aagttttaagataaaaataacattttttatgtttttgaaaacttgacaacgcaagttccaatgcaatacttacta 42411037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 52397465 - 52397399
Alignment:
Q  166 tttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatactt 232  Q
    |||||||||||| || ||  |||||| ||||| | ||||||||||||||||||  ||||||||||||    
T  52397465 tttaaaatgaaaatatcaacttttatactttttagaagttgacaacacaaattctaatgtaatactt 52397399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 111 - 255
Target Start/End: Complemental strand, 21067743 - 21067598
Alignment:
Q  111 ggtcatgttaaccggtgc-tccgaggcactggttaaggaaactnnnnnnnggaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgaca 209  Q
    |||||||||||||| ||| ||||  ||||||||||||||||||       |||||||||||||||||||||  ||||||||||||||| || || |||||    
T  21067743 ggtcatgttaaccgatgcctccggtgcactggttaaggaaactcaaaaaaggaagttttaaaatgaaagtactactttttatgcttttgaagagatgaca 21067644  T
Q  210 acacaaatttcaatgtaatacttactatattctactctttaaccag 255  Q
    |||||| |||||||||||||||||||| |||  |||| ||||||||    
T  21067643 acacaagtttcaatgtaatacttactacatttgactccttaaccag 21067598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 112 - 255
Target Start/End: Original strand, 28988341 - 28988486
Alignment:
Q  112 gtcatgttaaccggtgctccgaggcactggttaaggaaactnnnnnnnggaagttttaaaatgaaagtaacactttt--tatgcttttaaaaagttgaca 209  Q
    ||||||||||||  |||  || |||||||||||||||||||       |||| ||||||||||||||||||||||||  ||||||||| ||||||||||     
T  28988341 gtcatgttaaccattgccgcggggcactggttaaggaaactaaaaaaaggaaattttaaaatgaaagtaacactttttttatgcttttgaaaagttgacg 28988440  T
Q  210 acacaaatttcaatgtaatacttactatattctactctttaaccag 255  Q
    |||||||||||||||||||| |||| | |||  |||| ||||||||    
T  28988441 acacaaatttcaatgtaataattaccacatttgactccttaaccag 28988486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 19187215 - 19187144
Alignment:
Q  162 aagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatactta 233  Q
    ||||||||||||||||  |||||||||||||||||| || |||||||||||||||||||||||||| |||||    
T  19187215 aagttttaaaatgaaaacaacactttttatgcttttgaagagttgacaacacaaatttcaatgtaaaactta 19187144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 39753317 - 39753387
Alignment:
Q  161 gaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatact 231  Q
    ||||||||||||||||||||| ||||||||||||||| || |||||||| ||||| |||||||||||||||    
T  39753317 gaagttttaaaatgaaagtaatactttttatgcttttgaagagttgacagcacaagtttcaatgtaatact 39753387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 38282569 - 38282494
Alignment:
Q  165 ttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttactatatt 240  Q
    ||||||||||||| |||||||||||||  ||||||| |||||||||||||||||| ||||||||| ||| ||||||    
T  38282569 ttttaaaatgaaaataacactttttatatttttaaagagttgacaacacaaattttaatgtaatatttattatatt 38282494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 36603697 - 36603770
Alignment:
Q  162 aagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttact 235  Q
    |||||||||||||||||| |||||||||||| |||| || |||||||||||||| || ||||| ||||||||||    
T  36603697 aagttttaaaatgaaagtgacactttttatgtttttgaagagttgacaacacaagttccaatgcaatacttact 36603770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 1180020 - 1179945
Alignment:
Q  165 ttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttactatatt 240  Q
    ||||||||| ||| |||||||||||||| |||| | |||||||||||| || |||||||||||||||| |||||||    
T  1180020 ttttaaaataaaaataacactttttatgttttttagaagttgacaacataagtttcaatgtaatactttctatatt 1179945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 14123004 - 14122928
Alignment:
Q  134 ggcactggttaaggaaactnnnnnnnggaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaa 210  Q
    |||||||||||||||||||       |||||||||||||||||||||||||||| ||||||||| || |||||||||    
T  14123004 ggcactggttaaggaaactaaaagaaggaagttttaaaatgaaagtaacactttatatgcttttgaatagttgacaa 14122928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 136 - 233
Target Start/End: Complemental strand, 24233277 - 24233180
Alignment:
Q  136 cactggttaaggaaactnnnnnnnggaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatactta 233  Q
    |||||||||||||||||       |||||||| || ||||||||||||||||||||  |||| ||||||||||| ||||| || ||||| ||||||||    
T  24233277 cactggttaaggaaactaaaaaaaggaagtttgaagatgaaagtaacactttttatatttttgaaaagttgacagcacaagttccaatgcaatactta 24233180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 36974030 - 36974148
Alignment:
Q  118 ttaaccggtgc-tccgaggcactggttaaggaaactnnnnnnnggaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaa 216  Q
    ||||||||||| ||||||||||||| |||| |||||       |||| ||||||||||||| |||||| ||||||| |||| || ||||||||||||||     
T  36974030 ttaaccggtgcctccgaggcactggataag-aaacttaaaaaaggaaattttaaaatgaaaataacacattttatgtttttgaagagttgacaacacaag 36974128  T
Q  217 tttcaatgtaatacttacta 236  Q
    ||  |||| |||| ||||||    
T  36974129 ttctaatgcaatatttacta 36974148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 6677137 - 6677086
Alignment:
Q  185 tttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttacta 236  Q
    ||||||||||||| || |||||| ||||||||||||||| ||| ||||||||    
T  6677137 tttttatgcttttgaagagttgagaacacaaatttcaatataaaacttacta 6677086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 12383956 - 12384006
Alignment:
Q  186 ttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttacta 236  Q
    |||||||||||| |  ||||||||||||||||||||||  |||||||||||    
T  12383956 ttttatgcttttgaggagttgacaacacaaatttcaattcaatacttacta 12384006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 39031739 - 39031668
Alignment:
Q  162 aagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttac 234  Q
    |||||||||||||||||||| | |||||||| |||| || | |||||| || |||||| ||||||||| ||||    
T  39031739 aagttttaaaatgaaagtaatattttttatg-ttttgaataattgacagcataaattttaatgtaatatttac 39031668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 111 - 240
Target Start/End: Original strand, 45484990 - 45485119
Alignment:
Q  111 ggtcatgttaaccggtgctccgaggcactggttaaggaaactnnnnnnnggaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaa 210  Q
    ||||||||||||||||||| || |||||||||||||||| ||        ||| ||||||||| ||| |||||| |||||||||||| | ||||||||||    
T  45484990 ggtcatgttaaccggtgcttcggggcactggttaaggaacctaaaaaaaagaaattttaaaataaaaataacacattttatgctttttagaagttgacaa 45485089  T
Q  211 cacaaatttcaatgtaatacttactatatt 240  Q
    |||||||||||||| |||||||||||||||    
T  45485090 cacaaatttcaatgcaatacttactatatt 45485119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 161 - 255
Target Start/End: Original strand, 32022615 - 32022709
Alignment:
Q  161 gaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttactatattctactctttaaccag 255  Q
    ||||||||||||| ||||||| ||||||||| |||||||||||||||||  |||| |||||||||||||||||| | |||  |||| ||||||||    
T  32022615 gaagttttaaaataaaagtaatactttttatacttttaaaaagttgacagtacaattttcaatgtaatacttaccacatttgactccttaaccag 32022709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 111 - 233
Target Start/End: Original strand, 48611679 - 48611802
Alignment:
Q  111 ggtcatgttaaccggtg-ctccgaggcactggttaaggaaactnnnnnnnggaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgaca 209  Q
    ||||||||||||||||| || || |||||||||||||||||||       |  ||||||||||| ||||||||||||||||| ||||| ||||||| |||    
T  48611679 ggtcatgttaaccggtgtctacggggcactggttaaggaaactaaaaaaagatagttttaaaataaaagtaacactttttatacttttgaaaagttaaca 48611778  T
Q  210 acacaaatttcaatgtaatactta 233  Q
    |||||| || ||||||| ||||||    
T  48611779 acacaagttgcaatgtagtactta 48611802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 19940549 - 19940674
Alignment:
Q  111 ggtcatgttaaccggtgctcc-gaggcactggttaaggaaactnnnnnnnggaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgaca 209  Q
    |||||||||||||||||| || | |||||||||||||||||||       | |||||||||| ||||| ||||||||||||||||||| |  ||||||||    
T  19940549 ggtcatgttaaccggtgcccccggggcactggttaaggaaactaaaaag-gaaagttttaaagtgaaaataacactttttatgcttttgaggagttgaca 19940647  T
Q  210 acacaaatttcaatgtaatacttacta 236  Q
     || || |||||||| |||||||||||    
T  19940648 gcataagtttcaatgcaatacttacta 19940674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 255
Target Start/End: Complemental strand, 34663185 - 34663092
Alignment:
Q  162 aagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttactatattctactctttaaccag 255  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||  |||| || ||||  ||||||||| | |||  |||| ||||||||    
T  34663185 aagttttaaaatgaaagtaacactttttatacttttgaaaagttgacagtacaagttccaatacaatacttaccacatttgactccttaaccag 34663092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 4941199 - 4941270
Alignment:
Q  165 ttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttacta 236  Q
    ||||||||| ||| ||||||||||||||||||| |  |||||||||||||| |||||||| |||| ||||||    
T  4941199 ttttaaaataaaaataacactttttatgcttttgaggagttgacaacacaagtttcaatgcaataattacta 4941270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 1408694 - 1408620
Alignment:
Q  162 aagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttacta 236  Q
    |||||||||||||||| ||| |||||||||| |||| || |||||||||||||| || |||||||| | ||||||    
T  1408694 aagttttaaaatgaaaataaaactttttatgtttttgaagagttgacaacacaagttccaatgtaaaaattacta 1408620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 40605156 - 40605228
Alignment:
Q  165 ttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttactatatt 240  Q
    ||||||||||||| |||||||||||||| |||| | ||||   ||||| |||||||||| ||||||||||||||||    
T  40605156 ttttaaaatgaaattaacactttttatgtttttgagaagt---caacagaaatttcaatataatacttactatatt 40605228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 48768361 - 48768286
Alignment:
Q  179 taacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttactatattctactctttaacca 254  Q
    ||||||||||||| |||||||| |||||||||||||| || |||| |||||  |||||||||  | ||||||||||    
T  48768361 taacactttttatacttttaaagagttgacaacacaagttccaatataatatctactatatttgattctttaacca 48768286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 46289803 - 46289877
Alignment:
Q  162 aagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttacta 236  Q
    |||||||||| ||||| |||||||||||||| |||| ||  ||||||| || || || ||||| |||||||||||    
T  46289803 aagttttaaagtgaaaataacactttttatgtttttgaagtgttgacagcaaaagttacaatgcaatacttacta 46289877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 113 - 236
Target Start/End: Original strand, 40995773 - 40995897
Alignment:
Q  113 tcatgttaaccggtgc-tccgaggcactggttaaggaaactnnnnnnnggaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaac 211  Q
    ||||||||||| |||| || ||||||| |||||| ||||||       |||||||||||||||||| |||||||||||||| |||| || ||||||||||    
T  40995773 tcatgttaaccagtgcctctgaggcaccggttaatgaaactaagaaaaggaagttttaaaatgaaaataacactttttatgtttttgaagagttgacaac 40995872  T
Q  212 acaaatttcaatgtaatacttacta 236  Q
    |||||||||||||||||||||||||    
T  40995873 acaaatttcaatgtaatacttacta 40995897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 111 - 255
Target Start/End: Original strand, 9799200 - 9799345
Alignment:
Q  111 ggtcatgttaaccggtgctcc-gaggcactggttaaggaaactnnnnnnnggaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgaca 209  Q
    ||||||||||||| |||| || | |||||||||||||||||||       | |||| ||||||| || |||||||||||||| ||||| || ||||||||    
T  9799200 ggtcatgttaaccagtgcccccgtggcactggttaaggaaactaaaaattgaaagtcttaaaataaaggtaacactttttatacttttcaagagttgaca 9799299  T
Q  210 acacaaatttcaatgtaatacttactatattctactctttaaccag 255  Q
    |||||| || ||||||||||||||| | |||  |||| ||||||||    
T  9799300 acacaagttccaatgtaatacttaccacatttaactccttaaccag 9799345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 110 - 255
Target Start/End: Original strand, 7222798 - 7222939
Alignment:
Q  110 aggtcatgttaaccggtgctccgaggcactggttaaggaaactnnnnnnnggaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgaca 209  Q
    |||||||||||||||||||  | || |||| ||||||||||||       | || ||||||||| |||||||||||||||||| |||| || |||  |||    
T  7222798 aggtcatgttaaccggtgcatccagacactagttaaggaaactaaaaa--gaaaattttaaaataaaagtaacactttttatgtttttgaatagt--aca 7222893  T
Q  210 acacaaatttcaatgtaatacttactatattctactctttaaccag 255  Q
     ||||||||||||||||||| ||| ||||||  |||| ||||||||    
T  7222894 gcacaaatttcaatgtaatatttattatatttaactccttaaccag 7222939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 134 - 236
Target Start/End: Original strand, 15111845 - 15111947
Alignment:
Q  134 ggcactggttaaggaaactnnnnnnnggaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatactta 233  Q
    |||||||||||||||||||        ||| ||||||||||||| |||||||||||||  |||| |  |||||||||||||| ||| ||| ||| |||||    
T  15111845 ggcactggttaaggaaactaaaaaaaagaaattttaaaatgaaaataacactttttatattttttaggagttgacaacacaagttttaatataaaactta 15111944  T
Q  234 cta 236  Q
    |||    
T  15111945 cta 15111947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 45397578 - 45397512
Alignment:
Q  165 ttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatactt 232  Q
    ||||||||| ||| |||||||||| |  ||||| | |||||||||||| |||||||||||||||||||    
T  45397578 ttttaaaataaaaataacacttttaaa-ctttttagaagttgacaacaaaaatttcaatgtaatactt 45397512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 12000143 - 12000217
Alignment:
Q  162 aagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttacta 236  Q
    |||||||||| ||||| ||| | ||||||||||||| | | ||||||| |||||||| ||||| || ||||||||    
T  12000143 aagttttaaagtgaaaataatattttttatgcttttgagatgttgacagcacaaattccaatgcaacacttacta 12000217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 885774 - 885706
Alignment:
Q  160 ggaagttttaaaatgaaagtaacacttttt--atgcttttaaaaagttgacaacacaaatttcaatgta 226  Q
    |||| ||||||||||||| ||||| |||||  || |||||||  ||||||||||||||||| |||||||    
T  885774 ggaaattttaaaatgaaaataacattttttttattcttttaaggagttgacaacacaaattccaatgta 885706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 27415255 - 27415335
Alignment:
Q  160 ggaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttactatatt 240  Q
    |||| ||||||| | ||| |||||||||| ||  |||| | |||||||||||| || |||||||||||| ||| |||||||    
T  27415255 ggaaattttaaagtaaaaataacacttttgatatttttgagaagttgacaacataagtttcaatgtaatgcttcctatatt 27415335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 27756542 - 27756471
Alignment:
Q  165 ttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttacta 236  Q
    ||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  27756542 ttttaaaatgaaaataacactttttatgcttttgaagagttgacaacacaaatttcaatgtaatacttacta 27756471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 111 - 234
Target Start/End: Complemental strand, 19328948 - 19328824
Alignment:
Q  111 ggtcatgttaaccggtgctccgagg-cactggttaaggaaactnnnnnnnggaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgaca 209  Q
    |||||||||||||||||| ||| || |||||||||||||||||        ||||||||||||||||||||||||||||||| ||||| || |||||| |    
T  19328948 ggtcatgttaaccggtgccccgggggcactggttaaggaaactaaaaaaatgaagttttaaaatgaaagtaacactttttatacttttgaagagttgata 19328849  T
Q  210 acacaaatttcaatgtaatacttac 234  Q
     ||||| || |||||||||||||||    
T  19328848 gcacaagttccaatgtaatacttac 19328824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 3427938 - 3427867
Alignment:
Q  165 ttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttacta 236  Q
    ||||||||||||| |||||||||||||| |||| || |||||||||||||| |||||||  |||||||||||    
T  3427938 ttttaaaatgaaaataacactttttatgtttttgaagagttgacaacacaagtttcaatacaatacttacta 3427867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 3913729 - 3913655
Alignment:
Q  160 ggaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttac 234  Q
    |||| ||||||||||||||||||||||||||| ||||| || |||| ||||||||| || ||| |||||||||||    
T  3913729 ggaatttttaaaatgaaagtaacactttttatacttttgaagagttaacaacacaagttccaacgtaatacttac 3913655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 25474657 - 25474715
Alignment:
Q  165 ttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaat 223  Q
    ||||||||||||| ||||| ||||||||||||| || ||||||||||||||||||||||    
T  25474657 ttttaaaatgaaaataacattttttatgcttttgaagagttgacaacacaaatttcaat 25474715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 43159927 - 43159856
Alignment:
Q  165 ttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttacta 236  Q
    ||||||||||||| |||||||||||| | |||| |  |||||||||||||| || ||||| |||||||||||    
T  43159927 ttttaaaatgaaaataacactttttaagtttttgaggagttgacaacacaagttccaatgcaatacttacta 43159856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 4687364 - 4687425
Alignment:
Q  162 aagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaat 223  Q
    |||||||||| | ||| ||||||||||||||||||| | ||||||| | |||||||| ||||    
T  4687364 aagttttaaagtaaaaataacactttttatgcttttgagaagttgatagcacaaattccaat 4687425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 20032989 - 20032924
Alignment:
Q  165 ttttaaaatgaa-agtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaata 229  Q
    |||||||||||| | |||||||||||||| |||| || ||||||||| |||| || ||||||||||    
T  20032989 ttttaaaatgaagaataacactttttatgtttttgaagagttgacaatacaagttccaatgtaata 20032924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 46871361 - 46871305
Alignment:
Q  173 tgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaata 229  Q
    |||||||||||||||||||  |||  |  |||||||||||||| |||||||||||||    
T  46871361 tgaaagtaacactttttatattttcgaggagttgacaacacaagtttcaatgtaata 46871305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 115 - 255
Target Start/End: Complemental strand, 6230 - 6089
Alignment:
Q  115 atgttaaccggtgctcc-gaggcactggttaaggaaactnnnnnnnggaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacac 213  Q
    ||||||||||||| ||| | ||||| |||||||||||||       | ||||||||||||||||||||||||||||||| |||| ||||||||||| ||     
T  6230 atgttaaccggtgttccaggggcaccggttaaggaaactaaaaaaagaaagttttaaaatgaaagtaacactttttatgtttttgaaaagttgacagcat 6131  T
Q  214 aaatttcaatgtaatacttactatattctactctttaaccag 255  Q
    ||||| ||||| ||||||||||| |||  |||| ||||||||    
T  6130 aaattccaatgcaatacttactacatttgactccttaaccag 6089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 9521066 - 9521137
Alignment:
Q  162 aagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatactta 233  Q
    |||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||    
T  9521066 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaagtttcaatgtaatactta 9521137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 16634544 - 16634422
Alignment:
Q  113 tcatgttaaccggtgc-tccgaggcactggttaaggaaactnnnnnnnggaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaac 211  Q
    |||||||||||||||| ||||  |||||| |||||||||||        |||||||||||||  ||| |||| ||||||||||||| ||||||||||| |    
T  16634544 tcatgttaaccggtgcctccggagcactgattaaggaaactaataaaatgaagttttaaaatagaagcaacattttttatgcttttgaaaagttgacagc 16634445  T
Q  212 acaaatttcaatgtaatacttac 234  Q
    ||||||| |||||||||||||||    
T  16634444 acaaattccaatgtaatacttac 16634422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 3037485 - 3037421
Alignment:
Q  165 ttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaata 229  Q
    ||||||||| ||||||||||||||||| |||||||  ||||||||||||||||| ||||||||||    
T  3037485 ttttaaaatcaaagtaacactttttatacttttaaggagttgacaacacaaattccaatgtaata 3037421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 255
Target Start/End: Complemental strand, 27322882 - 27322731
Alignment:
Q  102 aatttattaggtcatgttaaccggtgctccgaggcactggttaaggaaactnnnnnnnggaagttttaaaatgaaagtaacactttttatgcttttaaaa 201  Q
    |||||||  ||||||||||||| |||   || |||||||||||||||||||       |||||||  ||||| ||||||| ||||||||||||||| ||     
T  27322882 aatttatagggtcatgttaaccagtgt--cggggcactggttaaggaaactaaaaaaaggaagttcgaaaataaaagtaatactttttatgcttttcaag 27322785  T
Q  202 agttgacaacacaaatttcaatgtaatacttactatattctactctttaaccag 255  Q
    |||||||| ||||| || ||||| ||||||||| | |||  |||| ||||||||    
T  27322784 agttgacagcacaagttccaatgcaatacttaccacatttgactccttaaccag 27322731  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 6983185 - 6983259
Alignment:
Q  166 tttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttactatatt 240  Q
    |||||| ||||| ||||||||||||||||||| |  |||||||| ||||| || ||||||||||||| |||||||    
T  6983185 tttaaagtgaaaataacactttttatgctttttaggagttgacaccacaagttccaatgtaatactttctatatt 6983259  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 9116404 - 9116477
Alignment:
Q  161 gaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttac 234  Q
    ||||||||||||| ||||||||||||| ||| ||||| ||||||||||| ||||| || ||||| |||| ||||    
T  9116404 gaagttttaaaataaaagtaacactttgtatacttttcaaaagttgacagcacaagttccaatgcaatatttac 9116477  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 15371435 - 15371486
Alignment:
Q  161 gaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaaca 212  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||||| ||||||    
T  15371435 gaagttttaaagtgaaaataacactttttatccttttaaaaagttaacaaca 15371486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 24138052 - 24138011
Alignment:
Q  194 ttttaaaaagttgacaacacaaatttcaatgtaatacttact 235  Q
    |||||| |||||||||||||||||||||||  ||||||||||    
T  24138052 ttttaagaagttgacaacacaaatttcaatacaatacttact 24138011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 25627459 - 25627402
Alignment:
Q  179 taacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttacta 236  Q
    |||||||||||||| |||| |  |||||||||||||| |||||||  |||||||||||    
T  25627459 taacactttttatgtttttgaggagttgacaacacaagtttcaataaaatacttacta 25627402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 35501542 - 35501506
Alignment:
Q  112 gtcatgttaaccggtgctccgaggcactggttaagga 148  Q
    |||||||||||||||||||||  ||||||||||||||    
T  35501542 gtcatgttaaccggtgctccggagcactggttaagga 35501506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 160 - 255
Target Start/End: Original strand, 30486950 - 30487045
Alignment:
Q  160 ggaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttactatattctactctttaaccag 255  Q
    |||||||||||||| ||||||||| |||||||  |||| ||||||||||  |||||||||||||| ||||||||| | |||  |||| ||||||||    
T  30486950 ggaagttttaaaataaaagtaacattttttatattttttaaaagttgacggcacaaatttcaatgcaatacttacgacatttgactccttaaccag 30487045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 47903887 - 47903957
Alignment:
Q  161 gaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatactta 233  Q
    ||||||||||||||||| |||||||||  ||| |||| |  ||||||||||||||||| ||||||||||||||    
T  47903887 gaagttttaaaatgaaaataacacttt--atgtttttgaggagttgacaacacaaattccaatgtaatactta 47903957  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 42468949 - 42469020
Alignment:
Q  165 ttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttacta 236  Q
    |||||||||||||  ||||||||||||| | ||||| ||| |||| ||||| ||||||| ||||||||||||    
T  42468949 ttttaaaatgaaaacaacactttttatgttattaaagagtggacatcacaagtttcaatttaatacttacta 42469020  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 37720555 - 37720629
Alignment:
Q  162 aagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttacta 236  Q
    |||||||||| ||||| ||||||||||||||||||| |  |||||||| ||||  || ||||| |||||||||||    
T  37720555 aagttttaaagtgaaaataacactttttatgcttttgaggagttgacagcacatgttccaatgcaatacttacta 37720629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 28710392 - 28710466
Alignment:
Q  162 aagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttacta 236  Q
    |||||||||| ||||| ||||| |||||||| |||| |  ||||  || |||||||| |||||||||||||||||    
T  28710392 aagttttaaagtgaaaataacaatttttatgtttttgaggagttagcagcacaaattccaatgtaatacttacta 28710466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 15972134 - 15972206
Alignment:
Q  160 ggaagttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatactt 232  Q
    |||| ||||||| ||||| ||| |||||||||  |||| |  | |||||||||||| ||||||||||||||||    
T  15972134 ggaaattttaaagtgaaaataatactttttatatttttgaggatttgacaacacaagtttcaatgtaatactt 15972206  T

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Target: scaffold0316 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 1357 - 1286
Alignment:
Q  165 ttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttacta 236  Q
    ||||||||||||| ||||| ||||||||||||| |  |||||||||||||| |  ||||| |||||||||||    
T  1357 ttttaaaatgaaaataacattttttatgcttttgatgagttgacaacacaagtaccaatgcaatacttacta 1286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 17170676 - 17170746
Alignment:
Q  165 ttttaaaatgaaagtaacactttttatgcttttaaaaagttgacaacacaaatttcaatgtaatacttact 235  Q
    ||||||||| ||| |||||||||||||  ||||||||| || |||||| |||||  ||||||| |||||||    
T  17170676 ttttaaaataaaaataacactttttatatttttaaaaaattaacaacataaattctaatgtaaaacttact 17170746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 7246678 - 7246638
Alignment:
Q  111 ggtcatgttaaccggtgctccgaggcactggttaaggaaac 151  Q
    ||||||||||||  |||||||| ||||||||||||||||||    
T  7246678 ggtcatgttaactagtgctccggggcactggttaaggaaac 7246638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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