View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3909_low_4 (Length: 491)
Name: NF3909_low_4
Description: NF3909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3909_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 44720581 - 44720109
Alignment:
| Q |
1 |
acatattttccctgccatatgcagtaagtaacttaatttcgtctacagttaacttttcaagataatatttcccgtcacattaaaaactcaagtgctgcca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44720581 |
acatattttccctgccatatgcagtaagtaacttaatttcgtctacagttaacttttcaagataatatttcccgtcacattaaaaactcaagtgctgcca |
44720482 |
T |
|
| Q |
101 |
tactcgataaacctaggtttgttatatgacttacaaatttgtataggatgtaactccatgcttagaataatgataaattagatctaccatttcaaataag |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44720481 |
tactcgataaacctaggtttgttatatgacttacaaatttgtataggatgtaactccatgcttagaataatgataaattagacctaccatttcaaataag |
44720382 |
T |
|
| Q |
201 |
atgattgttctattttagtaaccgcttacttacttttggcttcttcttggtagctgatattagtttgaaacaaagaagataaaagtaaatactgttagct |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44720381 |
atgattgttctattttagtaaccgcttacttacttttggcttcttcttggtagttgatattagtttgaaacaaagaagataaaagtaaatactgttagct |
44720282 |
T |
|
| Q |
301 |
acttgaacatatctgtttcatccattcttttatttttatgacagttaattacaacatgggaaagcatctcactatgtgaacgcttaaccatgtcagcctt |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
44720281 |
acttgaacatatctgtttcatccattcttttatttttatgacagttaattacaacatgggaaagcatctgactatgtgaacgtttaaccatgtcagcctt |
44720182 |
T |
|
| Q |
401 |
ctgcaggtaacattgctgcttttaatgctttaaatgaaaattcagatatcaactttataatgtatgttcatac |
473 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44720181 |
ctgtaggtaacattgctgcttttaatgctttaaatgaaaattcagatatcaactttataatgtatgttcatac |
44720109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 169 - 458
Target Start/End: Original strand, 43169572 - 43169874
Alignment:
| Q |
169 |
aatgataaattagatctaccatttcaaataagatgattgttctattttagtaaccgcttacttacttttggcttcttcttggtagctgatattagtttga |
268 |
Q |
| |
|
|||||||||||||| || |||||||||| | |||||||||||| |||||| || | ||| ||||| ||||||| |||||||||||||||||||||| |
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| T |
43169572 |
aatgataaattagacctgccatttcaaaaaggatgattgttctggtttagt----gcctgctttctttttgcttcttattggtagctgatattagtttga |
43169667 |
T |
|
| Q |
269 |
aacaaagaagataaaagtaaatactgttagctacttgaacatatctgtttcatccattcttttatttttatgacagtta-------------attacaac |
355 |
Q |
| |
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|| |||||||||||||||||| || || |||| | || |||||||||||| ||||||||||||||||||||||||| ||| |||| |
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| T |
43169668 |
aa--aagaagataaaagtaaattttg--agatactcgcacgtatctgtttcattcattcttttatttttatgacagttataatatgggtgtgatttcaac |
43169763 |
T |
|
| Q |
356 |
atgggaaagcatctcactatgtgaacgcttaaccatgtcagccttctgcaggtaa--------cattgctgcttttaatgctttaaatgaaaattcagat |
447 |
Q |
| |
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|| |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| || | |
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| T |
43169764 |
caggcaaagcatcacactatgtgaacgcttaaccgtgtcagccttctgcaggtaaaattaacgcattgctgtttttaatgctttaaatgaaaatttagtt |
43169863 |
T |
|
| Q |
448 |
atcaactttat |
458 |
Q |
| |
|
||||||||||| |
|
|
| T |
43169864 |
atcaactttat |
43169874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 38672779 - 38672672
Alignment:
| Q |
1 |
acatattttccctgccatatgcagtaagtaacttaatttcgtctacagttaacttttcaagataatatttcccgtcacattaaaaactcaagtgctgcca |
100 |
Q |
| |
|
|||| ||||||||| |||||||||||||| |||||||||||| |||| |||| |||||||| ||||| || |||||||||||| ||||| | || |
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| T |
38672779 |
acatcttttccctgttatatgcagtaagtac----atttcgtctacaattaaattttgaagataatctttcctgtaacattaaaaacttaagtgtcgtca |
38672684 |
T |
|
| Q |
101 |
tactcgataaac |
112 |
Q |
| |
|
|||||||||||| |
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|
| T |
38672683 |
tactcgataaac |
38672672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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